Variant report

Variant	rs73015941
Chromosome Location	chr3:159483100-159483101
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159482128..159483125-chr5:131826013..131826926,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000125347	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10440023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470474	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470475	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13314923	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695486	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4621369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56786891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781743	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015943	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015956	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017937	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017943	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017960	1.00[EUR][1000 genomes]
rs7612849	1.00[EUR][1000 genomes]
rs7615917	0.83[AMR][1000 genomes]
rs7651449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9811600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814058	1.00[EUR][1000 genomes]
rs9816506	0.83[AMR][1000 genomes]
rs9830331	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832139	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9845205	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845849	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846819	1.00[EUR][1000 genomes]
rs9850723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853973	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9855171	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	0.83[AMR][1000 genomes]
rs9877761	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878860	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335783	chr3:159480158-159484256	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159480000-159483200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
2	chr3:159480400-159483400	Active TSS	H1 Cell Line	embryonic stem cell
3	chr3:159480400-159483800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr3:159480400-159483800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr3:159480400-159483800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr3:159480400-159484200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr3:159480600-159483200	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr3:159480600-159483400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr3:159480600-159483400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
10	chr3:159480600-159483600	Active TSS	Psoas Muscle	Psoas
11	chr3:159480600-159483800	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr3:159480600-159483800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:159480600-159483800	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr3:159480600-159484000	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr3:159480600-159485400	Active TSS	Aorta	Aorta
16	chr3:159480800-159483200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:159480800-159483400	Active TSS	Fetal Intestine Large	intestine
18	chr3:159480800-159483600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:159480800-159483600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr3:159480800-159483800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:159480800-159483800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:159480800-159483800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:159480800-159483800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:159480800-159483800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
25	chr3:159480800-159483800	Active TSS	Ovary	ovary
26	chr3:159480800-159483800	Active TSS	A549	lung
27	chr3:159480800-159484000	Active TSS	Left Ventricle	heart
28	chr3:159480800-159484600	Active TSS	Colon Smooth Muscle	Colon
29	chr3:159480800-159485000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:159480800-159485000	Active TSS	Fetal Kidney	kidney
31	chr3:159480800-159485200	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr3:159481000-159483200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:159481000-159483200	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr3:159481000-159483400	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr3:159481000-159483400	Active TSS	Brain Substantia Nigra	brain
36	chr3:159481000-159483800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:159481000-159483800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:159481000-159483800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:159481000-159483800	Active TSS	Muscle Satellite Cultured Cells	--
40	chr3:159481000-159483800	Active TSS	Placenta Amnion	Placenta Amnion
41	chr3:159481000-159483800	Active TSS	Rectal Smooth Muscle	rectum
42	chr3:159481000-159484000	Bivalent/Poised TSS	Fetal Stomach	stomach
43	chr3:159481000-159484000	Active TSS	Lung	lung
44	chr3:159481000-159484000	Active TSS	Osteobl	bone
45	chr3:159481000-159484200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:159481000-159484200	Active TSS	NHDF-Ad	bronchial
47	chr3:159481000-159484400	Active TSS	Brain Angular Gyrus	brain
48	chr3:159481000-159484400	Active TSS	Right Atrium	heart
49	chr3:159481000-159485400	Active TSS	Brain Hippocampus Middle	brain
50	chr3:159481000-159485400	Active TSS	Right Ventricle	heart

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