Variant report

Variant	rs9816506
Chromosome Location	chr3:159555681-159555682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:159555577-159555853	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr3:159555619-159555842	MCF10A-Er-Src	breast:	n/a	chr3:159555750-159555757
3	FOS	chr3:159555671-159555832	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr3:159555604-159555791	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr3:159555624-159555832	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr3:159555653-159555853	MCF10A-Er-Src	breast:	n/a	chr3:159555750-159555757

Variant related genes	Relation type
SCHIP1	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10440023	0.83[AMR][1000 genomes]
rs10470474	0.83[AMR][1000 genomes]
rs10470475	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs10513545	0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13314923	0.83[AMR][1000 genomes]
rs13320912	0.86[EUR][1000 genomes]
rs1381061	1.00[EUR][1000 genomes]
rs28493475	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695486	0.83[AMR][1000 genomes]
rs4621369	0.83[AMR][1000 genomes]
rs56786891	0.83[AMR][1000 genomes]
rs6765276	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6781743	0.83[AMR][1000 genomes]
rs73015941	0.83[AMR][1000 genomes]
rs73015943	0.83[AMR][1000 genomes]
rs73015951	0.83[AMR][1000 genomes]
rs73015956	0.83[AMR][1000 genomes]
rs73015967	0.83[AMR][1000 genomes]
rs73017937	0.92[AMR][1000 genomes]
rs73017943	0.92[AMR][1000 genomes]
rs73017960	0.85[AMR][1000 genomes]
rs7612849	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7615816	1.00[EUR][1000 genomes]
rs7615917	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7651449	0.83[AMR][1000 genomes]
rs9290049	0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9811600	0.83[AMR][1000 genomes]
rs9814058	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9816649	1.00[EUR][1000 genomes]
rs9820062	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821194	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829527	0.86[EUR][1000 genomes]
rs9830331	1.00[AMR][1000 genomes]
rs9845205	0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs9845849	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846391	0.83[AMR][1000 genomes]
rs9846673	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846819	0.85[AMR][1000 genomes]
rs9850723	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs9851155	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853947	0.83[AMR][1000 genomes]
rs9853973	0.83[AMR][1000 genomes]
rs9854679	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9855171	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs9861347	0.90[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865889	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877761	0.92[AMR][1000 genomes]
rs9878860	1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880866	0.83[AMR][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
2	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
3	chr3:159550200-159557600	Weak transcription	Primary B cells from cord blood	blood
4	chr3:159550200-159557600	Weak transcription	Spleen	Spleen
5	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
6	chr3:159551800-159557600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:159551800-159557600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:159552800-159557400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:159552800-159557800	Enhancers	HUVEC	blood vessel
10	chr3:159553000-159556200	Enhancers	Colon Smooth Muscle	Colon
11	chr3:159553200-159557400	Enhancers	Rectal Smooth Muscle	rectum
12	chr3:159553600-159556000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:159553600-159556000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:159553600-159556000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:159553600-159556000	Enhancers	NHDF-Ad	bronchial
16	chr3:159553800-159555800	Enhancers	Fetal Heart	heart
17	chr3:159553800-159556000	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:159553800-159556000	Enhancers	HSMMtube	muscle
19	chr3:159554000-159555800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:159554000-159556000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:159554000-159556000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:159554000-159556000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr3:159554000-159556000	Enhancers	Fetal Stomach	stomach
24	chr3:159554000-159556000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr3:159554000-159556000	Enhancers	Stomach Smooth Muscle	stomach
26	chr3:159554000-159556000	Enhancers	HSMM	muscle
27	chr3:159554000-159557200	Enhancers	Brain Angular Gyrus	brain
28	chr3:159554000-159557400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr3:159554000-159557400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:159554000-159557400	Enhancers	Brain Hippocampus Middle	brain
31	chr3:159554000-159557400	Enhancers	Brain Substantia Nigra	brain
32	chr3:159554200-159555800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:159554200-159555800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:159554200-159555800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr3:159554200-159555800	Enhancers	Adipose Nuclei	Adipose
36	chr3:159554200-159555800	Enhancers	NH-A	brain
37	chr3:159554200-159555800	Enhancers	Osteobl	bone
38	chr3:159554200-159556000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr3:159554200-159556000	Enhancers	Hela-S3	cervix
40	chr3:159554200-159556400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:159554200-159556400	Enhancers	HMEC	breast
42	chr3:159554200-159557000	Enhancers	Brain Anterior Caudate	brain
43	chr3:159554400-159556200	Enhancers	NHEK	skin
44	chr3:159554600-159557200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:159554800-159556000	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr3:159554800-159556200	Enhancers	Primary hematopoietic stem cells	blood
47	chr3:159555000-159555800	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr3:159555000-159556000	Enhancers	Psoas Muscle	Psoas
49	chr3:159555000-159556000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr3:159555000-159556200	Enhancers	Fetal Muscle Leg	muscle

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