Variant report

Variant	rs9846673
Chromosome Location	chr3:159566484-159566485
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr3:159565744-159566714	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159560375..159562588-chr3:159564406..159567889,4	K562	blood:
2	chr3:159564767..159567021-chr3:159567735..159569460,2	MCF-7	breast:

Variant related genes	Relation type
SCHIP1	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10470475	1.00[TSI][hapmap]
rs10513545	0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13320912	0.86[EUR][1000 genomes]
rs1381061	1.00[EUR][1000 genomes]
rs28493475	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6765276	1.00[EUR][1000 genomes]
rs7612849	0.81[AFR][1000 genomes]
rs7615816	1.00[EUR][1000 genomes]
rs7615917	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9290049	0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9814058	0.81[AFR][1000 genomes]
rs9816506	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816649	1.00[EUR][1000 genomes]
rs9820062	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821194	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829527	0.86[EUR][1000 genomes]
rs9830331	0.83[AMR][1000 genomes]
rs9845205	0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs9845849	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs9850723	1.00[TSI][hapmap]
rs9851155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854679	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9855171	1.00[TSI][hapmap]
rs9861347	0.84[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9865889	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878860	0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159558000-159568800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:159558000-159570800	Weak transcription	Pancreas	Pancrea
3	chr3:159558000-159575000	Weak transcription	Gastric	stomach
4	chr3:159558800-159570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:159559000-159569400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:159559000-159570600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:159560400-159569200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:159560600-159568400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:159561000-159567400	Enhancers	Brain Substantia Nigra	brain
10	chr3:159561800-159570400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:159561800-159570400	Enhancers	Colon Smooth Muscle	Colon
12	chr3:159562200-159567200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:159562400-159570400	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:159562600-159569400	Enhancers	Brain Angular Gyrus	brain
15	chr3:159562800-159570000	Weak transcription	Adipose Nuclei	Adipose
16	chr3:159563000-159567200	Weak transcription	Fetal Stomach	stomach
17	chr3:159563000-159567200	Weak transcription	Psoas Muscle	Psoas
18	chr3:159563000-159567600	Enhancers	Brain Hippocampus Middle	brain
19	chr3:159563000-159569000	Weak transcription	Fetal Brain Male	brain
20	chr3:159563000-159569600	Weak transcription	Small Intestine	intestine
21	chr3:159563000-159570600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:159563200-159569400	Enhancers	Brain Anterior Caudate	brain
23	chr3:159563800-159567200	Weak transcription	Right Ventricle	heart
24	chr3:159563800-159567400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:159563800-159568400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:159563800-159569200	Weak transcription	NH-A	brain
27	chr3:159563800-159569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:159563800-159570400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:159563800-159570400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:159563800-159570400	Weak transcription	Aorta	Aorta
31	chr3:159563800-159570800	Weak transcription	Esophagus	oesophagus
32	chr3:159564000-159568400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:159564000-159569000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:159564000-159569800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:159564200-159569000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:159564200-159569400	Weak transcription	Fetal Brain Female	brain
37	chr3:159564400-159568600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:159564400-159569000	Weak transcription	Liver	Liver
39	chr3:159564400-159569200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:159564400-159569400	Weak transcription	NHEK	skin
41	chr3:159565000-159566600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:159565000-159567200	Enhancers	Stomach Smooth Muscle	stomach
43	chr3:159565200-159567600	Enhancers	Fetal Muscle Leg	muscle
44	chr3:159565200-159568000	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr3:159565200-159568200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:159565200-159569400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:159565400-159567000	Enhancers	Left Ventricle	heart
48	chr3:159565400-159567200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:159565400-159567600	Enhancers	Rectal Smooth Muscle	rectum
50	chr3:159565400-159568800	Weak transcription	Muscle Satellite Cultured Cells	--

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