Variant report

Variant	rs28493475
Chromosome Location	chr3:159548051-159548052
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159546081..159548652-chr3:159599760..159602729,2	MCF-7	breast:
2	chr3:159546339..159549535-chr3:159550770..159553340,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10513545	1.00[EUR][1000 genomes]
rs13320912	0.86[EUR][1000 genomes]
rs1381061	1.00[EUR][1000 genomes]
rs6765276	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73017937	0.85[AMR][1000 genomes]
rs73017943	0.85[AMR][1000 genomes]
rs7612849	0.85[AFR][1000 genomes]
rs7615816	1.00[EUR][1000 genomes]
rs7615917	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9290049	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9814058	0.85[AFR][1000 genomes]
rs9816506	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816649	1.00[EUR][1000 genomes]
rs9820062	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9821194	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9829527	0.86[EUR][1000 genomes]
rs9830331	0.92[AMR][1000 genomes]
rs9845205	0.92[AMR][1000 genomes]
rs9845849	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9846673	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9851155	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9854679	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9861347	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9865889	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877761	0.85[AMR][1000 genomes]
rs9878860	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159543400-159548400	Weak transcription	Spleen	Spleen
3	chr3:159543600-159548400	Weak transcription	Left Ventricle	heart
4	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:159543800-159548400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:159543800-159548800	Weak transcription	Esophagus	oesophagus
7	chr3:159543800-159555200	Weak transcription	Lung	lung
8	chr3:159545800-159548600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:159545800-159548800	Enhancers	HUVEC	blood vessel
10	chr3:159546200-159552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:159546400-159548200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:159546400-159548600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:159546400-159548600	Enhancers	Hela-S3	cervix
14	chr3:159546400-159548800	Enhancers	Adipose Nuclei	Adipose
15	chr3:159546400-159548800	Enhancers	Stomach Smooth Muscle	stomach
16	chr3:159546400-159549000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:159546400-159549000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:159546400-159549000	Enhancers	Colon Smooth Muscle	Colon
19	chr3:159546400-159549000	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr3:159546400-159549000	Enhancers	Fetal Heart	heart
21	chr3:159546400-159549000	Enhancers	HSMMtube	muscle
22	chr3:159546400-159549000	Enhancers	NHLF	lung
23	chr3:159546400-159549400	Enhancers	HMEC	breast
24	chr3:159546400-159551800	Enhancers	Primary hematopoietic stem cells	blood
25	chr3:159546400-159551800	Enhancers	Brain Hippocampus Middle	brain
26	chr3:159546400-159552000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:159546400-159552000	Enhancers	Brain Cingulate Gyrus	brain
28	chr3:159546400-159552000	Enhancers	Brain Substantia Nigra	brain
29	chr3:159546600-159548600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr3:159546600-159548600	Enhancers	Fetal Lung	lung
31	chr3:159546800-159548400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:159546800-159548600	Enhancers	Brain Anterior Caudate	brain
33	chr3:159546800-159549200	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr3:159546800-159549600	Enhancers	NHDF-Ad	bronchial
35	chr3:159547000-159548800	Enhancers	NHEK	skin
36	chr3:159547000-159549000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:159547000-159549000	Enhancers	Osteobl	bone
38	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
39	chr3:159547200-159548600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:159547200-159548600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:159547200-159549800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:159547400-159548400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:159547400-159549800	Weak transcription	Stomach Mucosa	stomach
44	chr3:159547600-159548200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:159547600-159548400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:159547600-159548400	Weak transcription	Psoas Muscle	Psoas
47	chr3:159547600-159548400	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr3:159547600-159548400	Weak transcription	NH-A	brain
49	chr3:159547600-159548600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr3:159547600-159549000	Enhancers	Skeletal Muscle Male	skeletal muscle

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