Variant report

Variant	rs9821194
Chromosome Location	chr3:159563450-159563451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159561088..159563606-chr3:159564406..159566329,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10513545	1.00[EUR][1000 genomes]
rs13320912	0.86[EUR][1000 genomes]
rs1381061	1.00[EUR][1000 genomes]
rs28493475	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6765276	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7612849	0.84[AFR][1000 genomes]
rs7615816	1.00[EUR][1000 genomes]
rs7615917	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9290049	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9814058	0.84[AFR][1000 genomes]
rs9816506	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816649	1.00[EUR][1000 genomes]
rs9820062	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829527	0.86[EUR][1000 genomes]
rs9830331	0.83[AMR][1000 genomes]
rs9845205	0.83[AMR][1000 genomes]
rs9845849	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9846673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854679	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9861347	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9865889	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9872127	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878860	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159556000-159566200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:159558000-159568800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:159558000-159570800	Weak transcription	Pancreas	Pancrea
4	chr3:159558000-159575000	Weak transcription	Gastric	stomach
5	chr3:159558200-159565800	Weak transcription	Spleen	Spleen
6	chr3:159558600-159566000	Weak transcription	Right Atrium	heart
7	chr3:159558800-159570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:159559000-159569400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:159559000-159570600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:159559600-159563600	Weak transcription	A549	lung
11	chr3:159559800-159564000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:159560000-159565200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:159560200-159565400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:159560400-159564000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:159560400-159569200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:159560600-159568400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:159561000-159563800	Enhancers	Placenta	Placenta
18	chr3:159561000-159564000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:159561000-159565800	Enhancers	Primary hematopoietic stem cells	blood
20	chr3:159561000-159567400	Enhancers	Brain Substantia Nigra	brain
21	chr3:159561200-159565000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:159561600-159564000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:159561600-159564000	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:159561600-159566200	Enhancers	HSMMtube	muscle
25	chr3:159561800-159563800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:159561800-159563800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:159561800-159563800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:159561800-159563800	Enhancers	Aorta	Aorta
29	chr3:159561800-159563800	Enhancers	Fetal Muscle Leg	muscle
30	chr3:159561800-159564000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:159561800-159564000	Enhancers	Fetal Heart	heart
32	chr3:159561800-159564200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:159561800-159564200	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr3:159561800-159565400	Enhancers	HMEC	breast
35	chr3:159561800-159570400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr3:159561800-159570400	Enhancers	Colon Smooth Muscle	Colon
37	chr3:159562200-159563600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr3:159562200-159567200	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr3:159562400-159563800	Enhancers	NH-A	brain
40	chr3:159562400-159564000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:159562400-159564200	Enhancers	Fetal Brain Female	brain
42	chr3:159562400-159564400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:159562400-159570400	Enhancers	Brain Cingulate Gyrus	brain
44	chr3:159562600-159565000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr3:159562600-159569400	Enhancers	Brain Angular Gyrus	brain
46	chr3:159562800-159563800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:159562800-159563800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr3:159562800-159563800	Enhancers	Left Ventricle	heart
49	chr3:159562800-159565400	Enhancers	Muscle Satellite Cultured Cells	--
50	chr3:159562800-159566200	Enhancers	HSMM	muscle

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