Variant report

Variant	rs74101979
Chromosome Location	chr1:95489590-95489591
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95457235..95459150-chr1:95488064..95489902,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs41292697	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56032536	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56204307	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57040913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57093304	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57122039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57213707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57950891	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59130528	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59338711	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59569067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60405904	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60491236	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60549805	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60555923	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60757816	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61488063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61772226	0.82[AFR][1000 genomes]
rs61774271	0.82[AFR][1000 genomes]
rs74101957	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101958	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101961	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101972	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101989	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101991	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101993	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101995	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101996	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101998	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101999	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74102002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103606	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103608	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103627	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103628	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103629	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103634	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103644	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74103651	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103654	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95476000-95490800	Weak transcription	Primary T cells from cord blood	blood
4	chr1:95480000-95508800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:95480200-95490600	Weak transcription	Liver	Liver
6	chr1:95480600-95491400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:95480800-95490800	Weak transcription	Left Ventricle	heart
8	chr1:95484000-95491000	Weak transcription	Psoas Muscle	Psoas
9	chr1:95484600-95491000	Weak transcription	Thymus	Thymus
10	chr1:95484600-95495000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:95484800-95490000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:95484800-95491600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:95484800-95494600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:95485000-95500400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:95485200-95507000	Weak transcription	Fetal Heart	heart
16	chr1:95486400-95489600	Enhancers	HMEC	breast
17	chr1:95486400-95490400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr1:95486600-95494600	Weak transcription	HepG2	liver
19	chr1:95487000-95489800	Enhancers	HUVEC	blood vessel
20	chr1:95487400-95494600	Weak transcription	Esophagus	oesophagus
21	chr1:95487600-95490800	Weak transcription	Brain Germinal Matrix	brain
22	chr1:95487800-95489600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:95487800-95490200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:95487800-95490200	Enhancers	NH-A	brain
25	chr1:95487800-95490400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr1:95487800-95491200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:95488000-95489600	Enhancers	NHDF-Ad	bronchial
28	chr1:95488000-95490200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr1:95488000-95490200	Enhancers	NHLF	lung
30	chr1:95488000-95490400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:95488000-95490800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:95488000-95507000	Weak transcription	Ovary	ovary
33	chr1:95488200-95489600	Enhancers	Osteobl	bone
34	chr1:95488200-95489800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:95488200-95490200	Weak transcription	Fetal Muscle Leg	muscle
36	chr1:95488200-95490200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr1:95488200-95490200	Enhancers	HSMM	muscle
38	chr1:95488200-95490800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr1:95488200-95491000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:95488200-95491200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr1:95488200-95491400	Weak transcription	Fetal Stomach	stomach
42	chr1:95488200-95492800	Weak transcription	Fetal Brain Male	brain
43	chr1:95488200-95499400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:95488200-95505400	Weak transcription	Pancreas	Pancrea
45	chr1:95488200-95507000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr1:95488200-95537600	Weak transcription	Right Ventricle	heart
47	chr1:95488400-95490600	Weak transcription	Fetal Brain Female	brain
48	chr1:95488400-95490800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr1:95488400-95491000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr1:95488400-95491200	Weak transcription	Brain Hippocampus Middle	brain

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