Variant report

Variant	rs56204307
Chromosome Location	chr1:95540653-95540654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95539591..95541319-chr1:95541795..95543723,2	K562	blood:
2	chr1:95539210..95541346-chr1:95694929..95697807,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs41292697	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56032536	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57040913	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57093304	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57122039	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57213707	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57950891	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59130528	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59338711	0.87[EUR][1000 genomes]
rs59569067	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs60405904	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60491236	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60549805	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60555923	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60757816	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61488063	0.93[EUR][1000 genomes]
rs61772226	1.00[AFR][1000 genomes]
rs61774271	1.00[AFR][1000 genomes]
rs74101940	0.81[EUR][1000 genomes]
rs74101946	0.81[EUR][1000 genomes]
rs74101955	0.81[EUR][1000 genomes]
rs74101957	0.87[EUR][1000 genomes]
rs74101958	0.93[EUR][1000 genomes]
rs74101961	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101968	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs74101972	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs74101979	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101983	0.93[EUR][1000 genomes]
rs74101989	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101991	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101993	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101995	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101996	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101998	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101999	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74102002	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103604	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103606	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103607	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103608	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103627	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103628	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103629	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103634	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95539000-95541600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:95539200-95541000	Weak transcription	A549	lung
3	chr1:95539200-95541600	Weak transcription	Colonic Mucosa	Colon
4	chr1:95539400-95541000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:95539400-95542000	Enhancers	HepG2	liver
6	chr1:95539800-95549000	Weak transcription	K562	blood
7	chr1:95540600-95542000	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links