The 2.0 version of rSNPBase

Variant report

Variant rs59338711
Chromosome Location chr1:95487623-95487624
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95447000-95490800 Weak transcription Fetal Intestine Large intestine
2 chr1:95448200-95491000 Weak transcription Primary B cells from cord blood blood
3 chr1:95476000-95490800 Weak transcription Primary T cells from cord blood blood
4 chr1:95480000-95508800 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr1:95480200-95490600 Weak transcription Liver Liver
6 chr1:95480600-95487800 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr1:95480600-95488000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:95480600-95491400 Weak transcription Fetal Intestine Small intestine
9 chr1:95480800-95490800 Weak transcription Left Ventricle heart
10 chr1:95484000-95491000 Weak transcription Psoas Muscle Psoas
11 chr1:95484200-95488800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:95484600-95489000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:95484600-95491000 Weak transcription Thymus Thymus
14 chr1:95484600-95495000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:95484800-95489400 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr1:95484800-95490000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:95484800-95491600 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr1:95484800-95494600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:95485000-95500400 Weak transcription Placenta Amnion Placenta Amnion
20 chr1:95485200-95507000 Weak transcription Fetal Heart heart
21 chr1:95486400-95488800 Enhancers Breast Myoepithelial Primary Cells Breast
22 chr1:95486400-95489600 Enhancers HMEC breast
23 chr1:95486400-95490400 Enhancers Cortex derived primary cultured neurospheres brain
24 chr1:95486600-95488200 Enhancers Fetal Adrenal Gland Adrenal Gland
25 chr1:95486600-95488200 Enhancers Fetal Stomach stomach
26 chr1:95486600-95489200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:95486600-95494600 Weak transcription HepG2 liver
28 chr1:95486800-95488200 Flanking Active TSS Osteobl bone
29 chr1:95487000-95487800 Flanking Active TSS Muscle Satellite Cultured Cells --
30 chr1:95487000-95487800 Flanking Active TSS Colon Smooth Muscle Colon
31 chr1:95487000-95487800 Enhancers Fetal Kidney kidney
32 chr1:95487000-95488000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:95487000-95488200 Flanking Active TSS Rectal Smooth Muscle rectum
34 chr1:95487000-95488200 Enhancers Stomach Mucosa stomach
35 chr1:95487000-95488400 Enhancers Fetal Brain Female brain
36 chr1:95487000-95488800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:95487000-95489800 Enhancers HUVEC blood vessel
38 chr1:95487200-95487800 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:95487200-95487800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:95487200-95487800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:95487200-95487800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:95487200-95487800 Active TSS Aorta Aorta
43 chr1:95487200-95487800 Active TSS Duodenum Smooth Muscle Duodenum
44 chr1:95487200-95487800 Flanking Active TSS NH-A brain
45 chr1:95487200-95488000 Flanking Active TSS Brain Anterior Caudate brain
46 chr1:95487200-95488000 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
47 chr1:95487200-95488000 Enhancers Colonic Mucosa Colon
48 chr1:95487200-95488000 Flanking Active TSS Duodenum Mucosa Duodenum
49 chr1:95487200-95488000 Flanking Active TSS Fetal Lung lung
50 chr1:95487200-95488000 Flanking Active TSS Fetal Muscle Leg muscle

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Last update: Aug 31, 2015