Variant report

Variant	rs74101957
Chromosome Location	chr1:95465377-95465378
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95456714..95459198-chr1:95465198..95466838,2	K562	blood:
2	chr1:95465187..95468061-chr1:95468404..95471127,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs41292697	0.81[EUR][1000 genomes]
rs56032536	0.81[EUR][1000 genomes]
rs56204307	0.87[EUR][1000 genomes]
rs57040913	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs57093304	0.81[EUR][1000 genomes]
rs57122039	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs57213707	0.81[EUR][1000 genomes]
rs57950891	0.81[EUR][1000 genomes]
rs59130528	0.81[EUR][1000 genomes]
rs59338711	0.87[EUR][1000 genomes]
rs59569067	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs60405904	0.81[EUR][1000 genomes]
rs60491236	0.81[EUR][1000 genomes]
rs60549805	0.81[EUR][1000 genomes]
rs60555923	0.82[AFR][1000 genomes]
rs60757816	0.81[EUR][1000 genomes]
rs61488063	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101940	0.94[EUR][1000 genomes]
rs74101946	0.94[EUR][1000 genomes]
rs74101955	0.94[EUR][1000 genomes]
rs74101958	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs74101961	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs74101968	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs74101972	0.87[EUR][1000 genomes]
rs74101979	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101983	0.81[EUR][1000 genomes]
rs74101989	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101991	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101993	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101995	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101996	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101998	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74101999	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74102002	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74103604	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74103606	0.81[EUR][1000 genomes]
rs74103607	0.81[EUR][1000 genomes]
rs74103608	0.81[EUR][1000 genomes]
rs74103627	0.81[EUR][1000 genomes]
rs74103628	0.81[EUR][1000 genomes]
rs74103629	0.81[EUR][1000 genomes]
rs74103634	0.81[EUR][1000 genomes]
rs74103644	0.81[EUR][1000 genomes]
rs74103651	0.87[EUR][1000 genomes]
rs74103654	0.87[EUR][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
3	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:95452600-95467000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:95452800-95468400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:95453600-95468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:95454000-95467600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:95455200-95473600	Weak transcription	Gastric	stomach
9	chr1:95455400-95467800	Weak transcription	Brain Substantia Nigra	brain
10	chr1:95455600-95467600	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:95455800-95467800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:95457000-95468600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:95459400-95465800	Weak transcription	Esophagus	oesophagus
14	chr1:95459400-95467600	Weak transcription	Ovary	ovary
15	chr1:95459600-95473000	Weak transcription	Aorta	Aorta
16	chr1:95459600-95473000	Weak transcription	Pancreas	Pancrea
17	chr1:95460200-95467600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:95460400-95467600	Weak transcription	Right Atrium	heart
19	chr1:95460400-95467600	Weak transcription	Right Ventricle	heart
20	chr1:95460400-95467600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:95460400-95467800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:95460400-95478400	Weak transcription	Left Ventricle	heart
23	chr1:95460600-95465400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:95460600-95468000	Weak transcription	Adipose Nuclei	Adipose
25	chr1:95461200-95469600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr1:95461400-95468000	Weak transcription	NH-A	brain
27	chr1:95461600-95466000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:95461600-95467400	Weak transcription	Fetal Kidney	kidney
29	chr1:95461600-95467600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr1:95462800-95465600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:95463000-95465800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:95463200-95466200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:95463400-95467800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr1:95463600-95468000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:95463800-95468000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr1:95464000-95466400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr1:95464000-95473000	Weak transcription	Lung	lung
38	chr1:95464200-95466800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:95464800-95467200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr1:95465000-95465400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr1:95465000-95465400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:95465000-95465600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:95465000-95465600	Enhancers	Fetal Muscle Leg	muscle
44	chr1:95465000-95465600	Enhancers	HSMMtube	muscle
45	chr1:95465200-95467800	Weak transcription	H1 Cell Line	embryonic stem cell

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