Variant report

Variant	rs74101958
Chromosome Location	chr1:95467608-95467609
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95456796..95459447-chr1:95467601..95470576,2	K562	blood:
2	chr1:95465187..95468061-chr1:95468404..95471127,2	MCF-7	breast:
3	chr1:95462439..95464042-chr1:95466232..95467812,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs41292697	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56032536	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56204307	0.93[EUR][1000 genomes]
rs57040913	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57093304	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57122039	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57213707	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57950891	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59130528	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59338711	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59569067	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60405904	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60491236	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60549805	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60555923	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60757816	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61488063	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101940	0.87[EUR][1000 genomes]
rs74101946	0.87[EUR][1000 genomes]
rs74101955	0.87[EUR][1000 genomes]
rs74101957	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs74101961	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101972	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101979	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101983	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101989	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101991	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101993	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101995	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101996	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101998	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101999	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74102002	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103604	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103606	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103607	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103608	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103627	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103628	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103629	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103634	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103644	0.87[EUR][1000 genomes]
rs74103651	0.93[EUR][1000 genomes]
rs74103654	0.93[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95452800-95468400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:95453600-95468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:95455200-95473600	Weak transcription	Gastric	stomach
6	chr1:95455400-95467800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:95455800-95467800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:95457000-95468600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:95459600-95473000	Weak transcription	Aorta	Aorta
10	chr1:95459600-95473000	Weak transcription	Pancreas	Pancrea
11	chr1:95460400-95467800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:95460400-95478400	Weak transcription	Left Ventricle	heart
13	chr1:95460600-95468000	Weak transcription	Adipose Nuclei	Adipose
14	chr1:95461200-95469600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr1:95461400-95468000	Weak transcription	NH-A	brain
16	chr1:95463400-95467800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:95463600-95468000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:95463800-95468000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:95464000-95473000	Weak transcription	Lung	lung
20	chr1:95465200-95467800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:95465400-95467800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:95465600-95467800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:95465600-95468000	Weak transcription	HSMMtube	muscle
24	chr1:95465600-95468200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:95465800-95467800	Weak transcription	Brain Angular Gyrus	brain
26	chr1:95466000-95468800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr1:95466600-95468000	Enhancers	Colon Smooth Muscle	Colon
28	chr1:95466800-95467800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:95466800-95467800	Weak transcription	HMEC	breast
30	chr1:95466800-95468200	Weak transcription	NHEK	skin
31	chr1:95467000-95469400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:95467400-95468200	Enhancers	Rectal Smooth Muscle	rectum
33	chr1:95467400-95468600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr1:95467400-95468800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:95467400-95469000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:95467400-95469000	Enhancers	Duodenum Mucosa	Duodenum
37	chr1:95467400-95469000	Enhancers	Fetal Kidney	kidney
38	chr1:95467400-95469000	Enhancers	Fetal Stomach	stomach
39	chr1:95467600-95467800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr1:95467600-95468000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr1:95467600-95468000	Enhancers	Right Atrium	heart
42	chr1:95467600-95468200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:95467600-95468200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:95467600-95468200	Enhancers	Brain Cingulate Gyrus	brain
45	chr1:95467600-95468200	Enhancers	Fetal Lung	lung
46	chr1:95467600-95468400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:95467600-95468400	Enhancers	Brain Hippocampus Middle	brain
48	chr1:95467600-95468600	Enhancers	Fetal Muscle Leg	muscle
49	chr1:95467600-95468800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr1:95467600-95468800	Enhancers	Brain Inferior Temporal Lobe	brain

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