Variant report

Variant	rs74103651
Chromosome Location	chr1:95554256-95554257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95548633..95550280-chr1:95551848..95554407,2	K562	blood:
2	chr1:95542549..95544382-chr1:95554227..95556548,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs41292697	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56032536	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56204307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57040913	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57093304	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57122039	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57213707	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57950891	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59130528	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59338711	0.87[EUR][1000 genomes]
rs59569067	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs60405904	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60491236	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60549805	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60555923	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60757816	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61488063	0.93[EUR][1000 genomes]
rs61772226	1.00[AFR][1000 genomes]
rs61774271	1.00[AFR][1000 genomes]
rs74101940	0.81[EUR][1000 genomes]
rs74101946	0.81[EUR][1000 genomes]
rs74101955	0.81[EUR][1000 genomes]
rs74101957	0.87[EUR][1000 genomes]
rs74101958	0.93[EUR][1000 genomes]
rs74101961	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101968	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs74101972	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs74101979	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101983	0.93[EUR][1000 genomes]
rs74101989	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101991	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101993	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101995	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101996	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101998	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74101999	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74102002	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103604	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103606	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103607	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103608	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103627	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103628	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103629	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103634	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95551800-95557800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:95552400-95556600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:95552800-95554600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:95553400-95554400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:95553400-95554400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:95553400-95555600	Enhancers	A549	lung
7	chr1:95554000-95554400	ZNF genes & repeats	K562	blood
8	chr1:95554200-95558400	Weak transcription	HepG2	liver
9	chr1:95554200-95564000	Weak transcription	Osteobl	bone

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