Variant report

Variant	rs74101968
Chromosome Location	chr1:95470783-95470784
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95465187..95468061-chr1:95468404..95471127,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs41292697	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56032536	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56204307	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs57040913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57093304	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57122039	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57213707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57950891	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59130528	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59338711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59569067	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60405904	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60491236	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60549805	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60555923	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60757816	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61488063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61772226	0.82[AFR][1000 genomes]
rs61774271	0.82[AFR][1000 genomes]
rs74101940	0.81[EUR][1000 genomes]
rs74101946	0.81[EUR][1000 genomes]
rs74101955	0.81[EUR][1000 genomes]
rs74101957	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs74101958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101972	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101983	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101989	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101991	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101993	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101995	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101996	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101998	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74101999	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74102002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103606	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103608	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103627	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103628	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103629	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103634	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74103644	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs74103651	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs74103654	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434137	chr1:95470240-95471189	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95455200-95473600	Weak transcription	Gastric	stomach
4	chr1:95459600-95473000	Weak transcription	Aorta	Aorta
5	chr1:95459600-95473000	Weak transcription	Pancreas	Pancrea
6	chr1:95460400-95478400	Weak transcription	Left Ventricle	heart
7	chr1:95464000-95473000	Weak transcription	Lung	lung
8	chr1:95468000-95472200	Weak transcription	Placenta	Placenta
9	chr1:95468000-95472800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:95468600-95482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:95468800-95472000	Weak transcription	HSMMtube	muscle
12	chr1:95468800-95472800	Weak transcription	HMEC	breast
13	chr1:95468800-95473000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:95468800-95473200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:95468800-95479600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:95469000-95472000	Weak transcription	Fetal Kidney	kidney
17	chr1:95469000-95472000	Weak transcription	Fetal Stomach	stomach
18	chr1:95469000-95472200	Weak transcription	HSMM	muscle
19	chr1:95469000-95472800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:95469000-95479600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:95469200-95470800	Weak transcription	K562	blood
22	chr1:95469200-95471200	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:95469200-95472000	Weak transcription	Fetal Lung	lung
24	chr1:95469200-95472800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:95469200-95478000	Weak transcription	Ovary	ovary
26	chr1:95469200-95479600	Weak transcription	Fetal Intestine Small	intestine
27	chr1:95469200-95487200	Weak transcription	Small Intestine	intestine
28	chr1:95469400-95470800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:95469400-95472200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:95469400-95472200	Weak transcription	NHLF	lung
31	chr1:95469400-95472600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:95469400-95478800	Weak transcription	HepG2	liver
33	chr1:95469600-95477800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:95469600-95477800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr1:95469800-95472200	Weak transcription	NHEK	skin
36	chr1:95470600-95473600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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