Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:4216125..4216970-chr10:4698864..4699461,3	MCF-7	breast:
2	chr10:3826297..3828095-chr10:4214749..4216420,2	MCF-7	breast:
3	chr10:4216121..4216868-chr10:4698521..4699087,2	MCF-7	breast:
4	chr10:4216133..4216654-chr10:4309278..4309857,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231298	Chromatin interaction
ENSG00000067082	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10904194	1.00[CEU][hapmap]
rs10904196	0.85[CEU][hapmap];0.83[GIH][hapmap];0.83[EUR][1000 genomes]
rs10904197	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11252348	1.00[CEU][hapmap]
rs11252367	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11252372	0.81[EUR][1000 genomes]
rs11252374	0.81[EUR][1000 genomes]
rs12263895	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs17132227	1.00[JPT][hapmap]
rs1885475	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs1923392	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs57986186	0.81[EUR][1000 genomes]
rs7087085	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs7101224	0.85[EUR][1000 genomes]
rs73599500	0.81[EUR][1000 genomes]
rs73601413	0.83[EUR][1000 genomes]
rs73601414	0.83[EUR][1000 genomes]
rs73601427	0.92[EUR][1000 genomes]
rs7901893	0.92[EUR][1000 genomes]
rs7910597	0.81[EUR][1000 genomes]
rs7916036	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4215600-4217800	Weak transcription	Spleen	Spleen
2	chr10:4215800-4223400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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