Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826722..3829082-chr10:4204634..4207187,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10751957	0.80[EUR][1000 genomes]
rs10904194	0.87[CEU][hapmap]
rs10904196	0.88[EUR][1000 genomes]
rs10904197	0.88[EUR][1000 genomes]
rs11252348	0.85[CEU][hapmap]
rs11252357	0.82[EUR][1000 genomes]
rs11252367	0.88[EUR][1000 genomes]
rs11252372	0.90[EUR][1000 genomes]
rs11252374	0.90[EUR][1000 genomes]
rs12246060	0.80[EUR][1000 genomes]
rs12265852	0.80[EUR][1000 genomes]
rs17132227	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1885475	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs1923392	0.88[EUR][1000 genomes]
rs2146058	0.80[EUR][1000 genomes]
rs57986186	0.90[EUR][1000 genomes]
rs7087085	0.88[EUR][1000 genomes]
rs7101224	0.90[EUR][1000 genomes]
rs73599500	0.90[EUR][1000 genomes]
rs73601413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73601414	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73601421	1.00[ASN][1000 genomes]
rs73601427	0.98[EUR][1000 genomes]
rs7901753	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7901893	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7910597	0.90[EUR][1000 genomes]
rs7916036	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9651517	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4203600-4209400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:4204800-4205800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr10:4204800-4205800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:4204800-4205800	Enhancers	Esophagus	oesophagus
5	chr10:4204800-4206000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:4205000-4205800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr10:4205000-4205800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:4205000-4205800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:4205000-4205800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:4205200-4205800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:4205400-4206800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:4205400-4211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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