Variant report

Variant	rs57986186
Chromosome Location	chr10:4174883-4174884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3826628..3829205-chr10:4172781..4176385,4	MCF-7	breast:
2	chr10:4173609..4176501-chr10:4189443..4191688,2	MCF-7	breast:
3	chr10:3825013..3827072-chr10:4173983..4175763,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10751957	0.80[EUR][1000 genomes]
rs10904196	0.98[EUR][1000 genomes]
rs10904197	0.98[EUR][1000 genomes]
rs11252357	0.87[EUR][1000 genomes]
rs11252367	0.98[EUR][1000 genomes]
rs11252372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246060	0.85[EUR][1000 genomes]
rs12263895	0.90[EUR][1000 genomes]
rs12265852	0.85[EUR][1000 genomes]
rs1885475	0.98[EUR][1000 genomes]
rs1923392	0.98[EUR][1000 genomes]
rs2146058	0.85[EUR][1000 genomes]
rs7087085	0.98[EUR][1000 genomes]
rs7101224	0.95[EUR][1000 genomes]
rs73599500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73601413	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73601414	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73601427	0.88[EUR][1000 genomes]
rs7901753	0.81[EUR][1000 genomes]
rs7901893	0.88[EUR][1000 genomes]
rs7910597	1.00[EUR][1000 genomes]
rs7916036	0.88[EUR][1000 genomes]
rs9651517	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407901	chr10:4172452-4176750	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:4172000-4175000	Enhancers	Osteobl	bone
3	chr10:4172200-4175200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:4172200-4175200	Enhancers	Fetal Thymus	thymus
5	chr10:4172600-4175200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:4172800-4175200	Enhancers	Small Intestine	intestine
7	chr10:4172800-4175200	Enhancers	HSMM	muscle
8	chr10:4173000-4175000	Enhancers	NHEK	skin
9	chr10:4173800-4175000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:4173800-4175200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:4173800-4175200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:4173800-4175400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:4174000-4175000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr10:4174000-4175200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:4174000-4175200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:4174200-4175000	Enhancers	HMEC	breast
17	chr10:4174200-4175200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:4174200-4175200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:4174200-4175200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:4174200-4175200	Enhancers	Lung	lung
21	chr10:4174400-4175200	Enhancers	Primary B cells from cord blood	blood
22	chr10:4174400-4175200	Enhancers	Right Ventricle	heart
23	chr10:4174400-4175400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:4174600-4175000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:4174600-4175000	Enhancers	NHLF	lung
26	chr10:4174600-4175200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:4174600-4175400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:4174600-4175800	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr10:4174800-4175000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:4174800-4175200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:4174800-4175800	Enhancers	NHDF-Ad	bronchial
32	chr10:4174800-4177200	Weak transcription	GM12878-XiMat	blood
33	chr10:4174800-4178000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:4174800-4178400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:4174800-4178800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:4174800-4179600	Weak transcription	HSMMtube	muscle
37	chr10:4174800-4187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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