Variant report

Variant	rs11252357
Chromosome Location	chr10:4162801-4162802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826233..3829471-chr10:4161588..4164936,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10751957	0.81[EUR][1000 genomes]
rs10904196	0.89[EUR][1000 genomes]
rs10904197	0.89[EUR][1000 genomes]
rs11252367	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11252372	0.87[EUR][1000 genomes]
rs11252374	0.87[EUR][1000 genomes]
rs12246060	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12263895	0.82[EUR][1000 genomes]
rs12265852	0.85[EUR][1000 genomes]
rs1885475	0.89[EUR][1000 genomes]
rs1923392	0.89[EUR][1000 genomes]
rs2146058	0.85[EUR][1000 genomes]
rs57986186	0.87[EUR][1000 genomes]
rs7087085	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7101224	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73599500	0.87[EUR][1000 genomes]
rs73601413	0.84[EUR][1000 genomes]
rs73601414	0.84[EUR][1000 genomes]
rs7910597	0.87[EUR][1000 genomes]
rs9651517	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4160600-4163400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:4160600-4163600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:4162600-4163000	Enhancers	Fetal Thymus	thymus
4	chr10:4162600-4163200	Enhancers	Right Atrium	heart
5	chr10:4162600-4163600	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:4162600-4163600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:4162600-4164200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:4162800-4163000	Enhancers	Fetal Heart	heart
9	chr10:4162800-4163000	Enhancers	Pancreas	Pancrea
10	chr10:4162800-4163200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:4162800-4163200	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr10:4162800-4163200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:4162800-4163400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:4162800-4163600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:4162800-4163600	Enhancers	Primary B cells from cord blood	blood
16	chr10:4162800-4163600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:4162800-4163600	Enhancers	GM12878-XiMat	blood
18	chr10:4162800-4164000	Enhancers	Fetal Muscle Trunk	muscle
19	chr10:4162800-4164000	Enhancers	Right Ventricle	heart
20	chr10:4162800-4164000	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:4162800-4164200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:4162800-4164400	Enhancers	Primary hematopoietic stem cells	blood
23	chr10:4162800-4164400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:4162800-4164600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:4162800-4164600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr10:4162800-4164800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr10:4162800-4165400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:4162800-4165800	Enhancers	Fetal Lung	lung

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