Variant report

Variant	rs7910597
Chromosome Location	chr10:4178026-4178027
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10751957	0.80[EUR][1000 genomes]
rs10904194	0.82[CEU][hapmap]
rs10904196	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10904197	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11252348	0.82[CEU][hapmap]
rs11252357	0.87[EUR][1000 genomes]
rs11252367	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11252372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12246060	0.85[EUR][1000 genomes]
rs12263895	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs12265852	0.85[EUR][1000 genomes]
rs1885475	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1923392	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2146058	0.85[EUR][1000 genomes]
rs57986186	1.00[EUR][1000 genomes]
rs7087085	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7101224	0.95[EUR][1000 genomes]
rs73599500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601413	0.98[EUR][1000 genomes]
rs73601414	0.98[EUR][1000 genomes]
rs73601427	0.88[EUR][1000 genomes]
rs7901753	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs7901893	0.88[EUR][1000 genomes]
rs7916036	0.88[EUR][1000 genomes]
rs9651517	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4174800-4178400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:4174800-4178800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:4174800-4179600	Weak transcription	HSMMtube	muscle
4	chr10:4174800-4187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:4175000-4180000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:4177200-4179800	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:4177600-4178600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:4177800-4178600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:4178000-4178600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr10:4178000-4178600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:4178000-4178600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:4178000-4178600	Flanking Active TSS	GM12878-XiMat	blood
13	chr10:4178000-4178800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:4178000-4178800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:4178000-4178800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:4178000-4179000	Enhancers	Primary B cells from cord blood	blood
17	chr10:4178000-4179400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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