Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4206984..4208900-chr10:4230649..4232810,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10904194	1.00[CEU][hapmap]
rs10904196	0.85[CEU][hapmap];0.83[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs10904197	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs11252348	1.00[CEU][hapmap]
rs11252367	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs11252372	0.88[EUR][1000 genomes]
rs11252374	0.88[EUR][1000 genomes]
rs12263895	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17132227	1.00[JPT][hapmap]
rs1885475	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1923392	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs57986186	0.88[EUR][1000 genomes]
rs7087085	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7101224	0.88[EUR][1000 genomes]
rs73599500	0.88[EUR][1000 genomes]
rs73601413	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73601414	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73601427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901753	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs7901893	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910597	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4203600-4209400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:4205400-4211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:4205800-4212400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:4206800-4207400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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