Variant report

Variant	rs11252367
Chromosome Location	chr10:4171751-4171752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4170365..4172316-chr10:4322695..4325438,2	MCF-7	breast:
2	chr10:3825405..3829399-chr10:4168357..4172262,5	MCF-7	breast:
3	chr10:4164939..4167456-chr10:4170244..4172717,2	MCF-7	breast:
4	chr10:4170399..4173353-chr10:4195678..4198644,2	K562	blood:
5	chr10:4101159..4103691-chr10:4170864..4173275,2	MCF-7	breast:
6	chr10:3817511..3819980-chr10:4171499..4173614,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10751957	0.82[EUR][1000 genomes]
rs10904194	0.85[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10904196	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10904197	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11252348	0.82[CEU][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs11252357	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11252372	0.98[EUR][1000 genomes]
rs11252374	0.98[EUR][1000 genomes]
rs12246060	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12263895	0.88[EUR][1000 genomes]
rs12265852	0.87[EUR][1000 genomes]
rs1885475	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1923392	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2146058	0.87[EUR][1000 genomes]
rs57986186	0.98[EUR][1000 genomes]
rs7087085	1.00[CEU][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101224	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73599500	0.98[EUR][1000 genomes]
rs73601413	0.95[EUR][1000 genomes]
rs73601414	0.95[EUR][1000 genomes]
rs73601427	0.85[EUR][1000 genomes]
rs7901753	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs7901893	0.85[EUR][1000 genomes]
rs7910597	0.98[EUR][1000 genomes]
rs7916036	0.85[EUR][1000 genomes]
rs9651517	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4163000-4173400	Weak transcription	NHLF	lung
2	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
3	chr10:4167800-4171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4169400-4173400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:4169600-4172400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:4169600-4172600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:4169600-4172600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:4169600-4172800	Enhancers	Primary B cells from cord blood	blood
10	chr10:4169600-4172800	Enhancers	HUVEC	blood vessel
11	chr10:4169600-4173200	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:4169600-4173200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:4170200-4172600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:4170600-4171800	Weak transcription	Dnd41	blood
15	chr10:4170600-4172200	Weak transcription	Placenta	Placenta
16	chr10:4170600-4172400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:4170600-4172600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:4170600-4172600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:4170600-4172800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:4170800-4172200	Weak transcription	Fetal Thymus	thymus
21	chr10:4170800-4172200	Weak transcription	Small Intestine	intestine
22	chr10:4170800-4172400	Weak transcription	Psoas Muscle	Psoas
23	chr10:4170800-4172600	Weak transcription	Primary T cells from cord blood	blood
24	chr10:4170800-4172600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:4170800-4172800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:4170800-4172800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:4170800-4172800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:4170800-4173000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:4170800-4173200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:4170800-4174400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:4171000-4171800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:4171000-4171800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:4171000-4172000	Weak transcription	Stomach Mucosa	stomach
34	chr10:4171000-4172200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:4171000-4172200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:4171000-4172400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:4171000-4172400	Weak transcription	Adipose Nuclei	Adipose
38	chr10:4171000-4172400	Weak transcription	Spleen	Spleen
39	chr10:4171000-4172600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:4171000-4172800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:4171000-4172800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:4171000-4172800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr10:4171000-4173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:4171000-4173800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:4171200-4172600	Weak transcription	Fetal Lung	lung
46	chr10:4171400-4173200	Enhancers	Right Atrium	heart
47	chr10:4171400-4173800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr10:4171400-4174800	Enhancers	Hela-S3	cervix
49	chr10:4171600-4172200	Weak transcription	Fetal Muscle Leg	muscle
50	chr10:4171600-4172400	Weak transcription	Gastric	stomach

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