Variant report
| Variant | rs73601413 |
|---|---|
| Chromosome Location | chr10:4200859-4200860 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10751957 | 0.82[EUR][1000 genomes] |
| rs10904196 | 0.95[EUR][1000 genomes] |
| rs10904197 | 0.95[EUR][1000 genomes] |
| rs11252357 | 0.84[EUR][1000 genomes] |
| rs11252367 | 0.95[EUR][1000 genomes] |
| rs11252372 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11252374 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12246060 | 0.82[EUR][1000 genomes] |
| rs12263895 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12265852 | 0.82[EUR][1000 genomes] |
| rs1885475 | 0.95[EUR][1000 genomes] |
| rs1923392 | 0.95[EUR][1000 genomes] |
| rs2146058 | 0.82[EUR][1000 genomes] |
| rs57986186 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7087085 | 0.95[EUR][1000 genomes] |
| rs7101224 | 0.93[EUR][1000 genomes] |
| rs73599500 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73601414 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73601427 | 0.90[EUR][1000 genomes] |
| rs7901753 | 0.83[EUR][1000 genomes] |
| rs7901893 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7910597 | 0.98[EUR][1000 genomes] |
| rs7916036 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9651517 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051297 | chr10:3908706-4277678 | Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv831772 | chr10:4039292-4212218 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:4194000-4203400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
