Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10904194	1.00[CEU][hapmap]
rs10904196	0.85[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs10904197	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs11252348	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11252357	0.81[EUR][1000 genomes]
rs11252367	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs11252372	0.80[EUR][1000 genomes]
rs11252374	0.80[EUR][1000 genomes]
rs12246060	0.96[EUR][1000 genomes]
rs12263895	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs12265852	0.96[EUR][1000 genomes]
rs1885475	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1923392	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2146058	0.96[EUR][1000 genomes]
rs57986186	0.80[EUR][1000 genomes]
rs7087085	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7101224	0.85[EUR][1000 genomes]
rs73599500	0.80[EUR][1000 genomes]
rs73601413	0.82[EUR][1000 genomes]
rs73601414	0.82[EUR][1000 genomes]
rs7901753	1.00[CEU][hapmap];0.83[GIH][hapmap]
rs7910597	0.80[EUR][1000 genomes]
rs9651517	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4128400-4129600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:4129000-4135600	Weak transcription	Ovary	ovary
3	chr10:4129400-4135600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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