Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3825405..3829399-chr10:4168357..4172262,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10751957	0.82[EUR][1000 genomes]
rs10904194	0.85[CEU][hapmap]
rs10904197	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11252348	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11252357	0.89[EUR][1000 genomes]
rs11252367	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252372	0.98[EUR][1000 genomes]
rs11252374	0.98[EUR][1000 genomes]
rs12246060	0.87[EUR][1000 genomes]
rs12263895	0.88[EUR][1000 genomes]
rs12265852	0.87[EUR][1000 genomes]
rs1885475	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1923392	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2146058	0.87[EUR][1000 genomes]
rs57986186	0.98[EUR][1000 genomes]
rs7087085	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101224	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73599500	0.98[EUR][1000 genomes]
rs73601413	0.95[EUR][1000 genomes]
rs73601414	0.95[EUR][1000 genomes]
rs73601427	0.85[EUR][1000 genomes]
rs7901753	0.85[CEU][hapmap];0.83[GIH][hapmap];0.83[EUR][1000 genomes]
rs7901893	0.85[EUR][1000 genomes]
rs7910597	0.98[EUR][1000 genomes]
rs7916036	0.85[EUR][1000 genomes]
rs9651517	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4163000-4173400	Weak transcription	NHLF	lung
2	chr10:4164000-4170000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:4164400-4169600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr10:4164600-4169600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
6	chr10:4167400-4169400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:4167800-4171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:4168800-4170000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:4169000-4169800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:4169000-4170200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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