Variant report

Variant	rs12246060
Chromosome Location	chr10:4161925-4161926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10751957	0.96[EUR][1000 genomes]
rs10904196	0.87[EUR][1000 genomes]
rs10904197	0.87[EUR][1000 genomes]
rs11252348	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11252357	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252367	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11252372	0.85[EUR][1000 genomes]
rs11252374	0.85[EUR][1000 genomes]
rs12263895	0.80[EUR][1000 genomes]
rs12265852	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1885475	0.87[EUR][1000 genomes]
rs1923392	0.87[EUR][1000 genomes]
rs2146058	1.00[EUR][1000 genomes]
rs57986186	0.85[EUR][1000 genomes]
rs7087085	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7101224	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73599500	0.85[EUR][1000 genomes]
rs73601413	0.82[EUR][1000 genomes]
rs73601414	0.82[EUR][1000 genomes]
rs7910597	0.85[EUR][1000 genomes]
rs9651517	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv947578	chr10:4159090-4162184	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4160600-4162800	Weak transcription	Fetal Heart	heart
2	chr10:4160600-4163400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:4160600-4163600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:4161800-4162800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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