Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4182960..4185170-chr10:4194252..4196255,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10751957	0.80[EUR][1000 genomes]
rs10904196	0.98[EUR][1000 genomes]
rs10904197	0.98[EUR][1000 genomes]
rs11252357	0.87[EUR][1000 genomes]
rs11252367	0.98[EUR][1000 genomes]
rs11252374	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246060	0.85[EUR][1000 genomes]
rs12263895	0.90[EUR][1000 genomes]
rs12265852	0.85[EUR][1000 genomes]
rs1885475	0.98[EUR][1000 genomes]
rs1923392	0.98[EUR][1000 genomes]
rs2146058	0.85[EUR][1000 genomes]
rs57986186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087085	0.98[EUR][1000 genomes]
rs7101224	0.95[EUR][1000 genomes]
rs73599500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73601413	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73601414	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73601427	0.88[EUR][1000 genomes]
rs7901753	0.81[EUR][1000 genomes]
rs7901893	0.88[EUR][1000 genomes]
rs7910597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916036	0.88[EUR][1000 genomes]
rs9651517	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4174800-4187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:4184000-4187000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:4184200-4193600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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