Variant report
| Variant | rs73599500 |
|---|---|
| Chromosome Location | chr10:4191224-4191225 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:3827620..3829415-chr10:4191183..4193524,2 | K562 | blood: | |
| 2 | chr10:3827915..3829530-chr10:4191183..4193783,2 | K562 | blood: | |
| 3 | chr10:4185617..4187923-chr10:4190496..4192874,2 | MCF-7 | breast: | |
| 4 | chr10:4173609..4176501-chr10:4189443..4191688,2 | MCF-7 | breast: | |
| 5 | chr10:3825804..3829654-chr10:4189562..4195409,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000067082 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10751957 | 0.80[EUR][1000 genomes] |
| rs10904196 | 0.98[EUR][1000 genomes] |
| rs10904197 | 0.98[EUR][1000 genomes] |
| rs11252357 | 0.87[EUR][1000 genomes] |
| rs11252367 | 0.98[EUR][1000 genomes] |
| rs11252372 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11252374 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12246060 | 0.85[EUR][1000 genomes] |
| rs12263895 | 0.90[EUR][1000 genomes] |
| rs12265852 | 0.85[EUR][1000 genomes] |
| rs1885475 | 0.98[EUR][1000 genomes] |
| rs1923392 | 0.98[EUR][1000 genomes] |
| rs2146058 | 0.85[EUR][1000 genomes] |
| rs57986186 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7087085 | 0.98[EUR][1000 genomes] |
| rs7101224 | 0.95[EUR][1000 genomes] |
| rs73601413 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73601414 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73601427 | 0.88[EUR][1000 genomes] |
| rs7901753 | 0.81[EUR][1000 genomes] |
| rs7901893 | 0.88[EUR][1000 genomes] |
| rs7910597 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7916036 | 0.88[EUR][1000 genomes] |
| rs9651517 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051297 | chr10:3908706-4277678 | Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv831772 | chr10:4039292-4212218 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:4184200-4193600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr10:4191200-4192000 | Active TSS | K562 | blood |
