Variant report

Variant	rs7933772
Chromosome Location	chr11:56185327-56185328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10791952	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10791961	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs10896227	0.82[ASN][1000 genomes]
rs10896290	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10896325	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12272403	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12277883	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12285921	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12291978	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12786642	0.87[ASN][1000 genomes]
rs1573512	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1905055	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1945228	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2128132	0.84[ASN][1000 genomes]
rs2220001	0.81[ASN][1000 genomes]
rs34434887	0.89[ASN][1000 genomes]
rs4420287	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4938829	0.89[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs4939037	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4939046	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4939054	0.87[ASN][1000 genomes]
rs594113	0.90[ASN][1000 genomes]
rs594568	0.88[ASN][1000 genomes]
rs597102	0.90[ASN][1000 genomes]
rs605734	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs610822	0.90[ASN][1000 genomes]
rs612885	0.90[ASN][1000 genomes]
rs615231	0.90[ASN][1000 genomes]
rs621826	0.90[ASN][1000 genomes]
rs624412	0.89[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs634955	0.88[ASN][1000 genomes]
rs637202	0.90[ASN][1000 genomes]
rs647027	0.90[ASN][1000 genomes]
rs647058	0.90[ASN][1000 genomes]
rs647402	0.88[ASN][1000 genomes]
rs652537	0.89[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs6591233	0.84[ASN][1000 genomes]
rs6591310	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs660788	0.90[ASN][1000 genomes]
rs663964	0.88[ASN][1000 genomes]
rs669453	0.89[ASN][1000 genomes]
rs672711	0.90[ASN][1000 genomes]
rs675120	0.90[ASN][1000 genomes]
rs675991	0.89[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs680490	0.88[ASN][1000 genomes]
rs683539	0.90[ASN][1000 genomes]
rs7105808	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7116573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7126732	0.89[ASN][1000 genomes]
rs7131637	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7930678	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7931261	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7940239	0.84[ASN][1000 genomes]
rs871301	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
4	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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