Variant report

Variant	rs9436008
Chromosome Location	chr1:150434631-150434632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 156 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs1097067	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1097068	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1097070	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1103115	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11205357	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11205373	0.92[ASN][1000 genomes]
rs11205385	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1145583	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11577600	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11577843	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11581351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587116	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11587575	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11587758	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11590324	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11590787	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12023378	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12028001	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12040949	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12042229	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12042579	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12045304	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12046446	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1260367	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1260368	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1260378	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1260386	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1260388	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1260389	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1260396	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1260400	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1260404	0.87[ASN][1000 genomes]
rs1260405	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1260406	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1260407	0.87[ASN][1000 genomes]
rs1260409	0.85[ASN][1000 genomes]
rs1260411	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1260421	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1260422	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1260458	0.88[ASN][1000 genomes]
rs1260459	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1313570	0.88[ASN][1000 genomes]
rs13294	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1498308	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1617829	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1625468	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1627235	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1631973	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1694362	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1694363	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1694364	0.88[ASN][1000 genomes]
rs1694369	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1694370	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1694375	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1694377	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1694380	0.84[ASN][1000 genomes]
rs1694381	0.84[ASN][1000 genomes]
rs1694385	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1694390	0.90[ASN][1000 genomes]
rs1747927	0.84[ASN][1000 genomes]
rs17596326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17597088	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1776274	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1776276	0.82[ASN][1000 genomes]
rs1815544	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1932934	0.95[ASN][1000 genomes]
rs1972031	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2264418	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454285	0.83[ASN][1000 genomes]
rs2454286	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2794614	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2794615	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2794678	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2794679	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2794681	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2794682	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2794684	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2794685	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2797653	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2867893	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867894	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2873669	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3125808	0.87[ASN][1000 genomes]
rs35057759	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3737240	0.81[AMR][1000 genomes]
rs3738487	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3820544	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3896342	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4333886	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4446975	0.96[ASN][1000 genomes]
rs4451552	0.96[ASN][1000 genomes]
rs45595332	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4581308	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs471464	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs486275	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs488271	0.84[ASN][1000 genomes]
rs4926394	0.92[ASN][1000 genomes]
rs4926395	0.92[ASN][1000 genomes]
rs4926422	0.87[ASN][1000 genomes]
rs4926436	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4926437	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970971	0.96[ASN][1000 genomes]
rs519126	0.83[ASN][1000 genomes]
rs521607	0.83[ASN][1000 genomes]
rs522435	0.81[AMR][1000 genomes]
rs55742549	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55823828	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55928222	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55996928	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56214461	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs578353	0.84[ASN][1000 genomes]
rs580060	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59898460	0.86[AMR][1000 genomes]
rs61819386	0.93[ASN][1000 genomes]
rs6662108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6672808	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6703652	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs696616	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs698916	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs698918	0.88[ASN][1000 genomes]
rs698919	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs698923	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72696885	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72696900	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7513205	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7517441	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7523428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538981	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7539458	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548085	0.87[ASN][1000 genomes]
rs7553867	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs828783	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs832621	0.92[ASN][1000 genomes]
rs832622	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs834228	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs834229	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs834230	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs834231	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs834232	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs834233	0.88[ASN][1000 genomes]
rs834234	0.90[ASN][1000 genomes]
rs834236	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs834241	0.92[ASN][1000 genomes]
rs834242	0.92[ASN][1000 genomes]
rs834243	0.86[ASN][1000 genomes]
rs844309	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9435997	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9436007	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9436108	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436112	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9436115	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436119	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9436125	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9436127	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9436008	MRPS21	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150373200-150442800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:150383400-150443200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:150401400-150448200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:150409800-150437000	Strong transcription	Fetal Thymus	thymus
5	chr1:150411200-150446400	Strong transcription	Dnd41	blood
6	chr1:150412000-150443000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:150413400-150436000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:150413600-150446200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:150413600-150446400	Strong transcription	Primary B cells from peripheral blood	blood
10	chr1:150413800-150446000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:150414000-150446400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:150414200-150440800	Strong transcription	Fetal Intestine Large	intestine
13	chr1:150414400-150442200	Weak transcription	Fetal Heart	heart
14	chr1:150419200-150441000	Weak transcription	HMEC	breast
15	chr1:150419200-150442200	Weak transcription	NH-A	brain
16	chr1:150419200-150443200	Weak transcription	Psoas Muscle	Psoas
17	chr1:150419800-150434800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:150422800-150446400	Strong transcription	Fetal Stomach	stomach
19	chr1:150423000-150436600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:150423800-150447200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:150424800-150446600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:150425200-150446200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr1:150425600-150435800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr1:150425800-150435000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:150425800-150445600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:150425800-150445800	Strong transcription	Fetal Muscle Leg	muscle
27	chr1:150425800-150447000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:150426800-150438600	Strong transcription	Thymus	Thymus
29	chr1:150426800-150446400	Strong transcription	Fetal Intestine Small	intestine
30	chr1:150427000-150438400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:150427400-150438600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:150427800-150436600	Weak transcription	K562	blood
33	chr1:150427800-150438000	Weak transcription	HSMM	muscle
34	chr1:150428400-150443200	Weak transcription	Small Intestine	intestine
35	chr1:150428600-150434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:150428600-150446400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:150428800-150438600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr1:150429000-150442600	Weak transcription	Stomach Mucosa	stomach
39	chr1:150429600-150434800	Strong transcription	Spleen	Spleen
40	chr1:150429600-150436000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:150429600-150436000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr1:150429600-150438200	Strong transcription	Liver	Liver
43	chr1:150429600-150439800	Strong transcription	Adipose Nuclei	Adipose
44	chr1:150429600-150440400	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr1:150429600-150447000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:150429800-150438800	Strong transcription	Lung	lung
47	chr1:150429800-150440600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:150430000-150442600	Weak transcription	Colonic Mucosa	Colon
49	chr1:150430200-150437000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:150430400-150443000	Weak transcription	NHLF	lung

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