Variant report

Variant	rs1498308
Chromosome Location	chr1:150295131-150295132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150291489..150302169-chr1:150333998..150340807,28	MCF-7	breast:
2	chr1:150292363..150295488-chr1:150335350..150339295,4	K562	blood:
3	chr1:150272515..150274604-chr1:150295107..150297514,2	K562	blood:
4	chr1:150291213..150297860-chr1:150334210..150339087,16	MCF-7	breast:
5	chr1:150248711..150251373-chr1:150294056..150296780,2	MCF-7	breast:
6	chr1:150206959..150209855-chr1:150291649..150295634,4	MCF-7	breast:
7	chr1:150264700..150268461-chr1:150290358..150296338,12	MCF-7	breast:
8	chr1:150292375..150296656-chr1:150333833..150339442,8	K562	blood:
9	chr1:150264361..150267747-chr1:150292578..150295568,3	K562	blood:
10	chr1:150253619..150256471-chr1:150290811..150295516,7	MCF-7	breast:
11	chr1:149858007..149859794-chr1:150293458..150295623,2	MCF-7	breast:
12	chr1:150264496..150269056-chr1:150292330..150296241,7	MCF-7	breast:
13	chr1:150254416..150258326-chr1:150293142..150296194,3	K562	blood:
14	chr1:150294499..150296589-chr1:150311548..150313994,2	MCF-7	breast:
15	chr1:150252171..150257673-chr1:150291650..150295636,15	MCF-7	breast:
16	chr1:150294036..150296676-chr1:150329031..150330678,2	MCF-7	breast:
17	chr1:150293804..150295488-chr17:45727043..45729157,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000222222	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000159208	Chromatin interaction
ENSG00000163125	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000187145	Chromatin interaction
ENSG00000108424	Chromatin interaction

Extended variants
information (count: 177 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs1097067	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1097068	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1097070	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1103115	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11205357	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11205359	0.90[ASN][1000 genomes]
rs11205373	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11205385	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1122967	0.87[ASN][1000 genomes]
rs1145583	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11577600	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11577843	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11581351	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11582423	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11587116	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11587575	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11587758	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11590324	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11590787	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12023378	0.85[ASN][1000 genomes]
rs12028001	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12029359	0.86[CHB][hapmap]
rs12040949	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12042229	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12042579	0.83[ASN][1000 genomes]
rs12045304	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12046446	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12046899	0.86[CHB][hapmap]
rs1260367	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1260368	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1260378	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1260386	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1260388	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1260389	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1260394	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1260396	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1260398	0.90[ASN][1000 genomes]
rs1260400	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1260404	0.96[ASN][1000 genomes]
rs1260405	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1260406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1260407	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1260409	0.94[ASN][1000 genomes]
rs1260411	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1260421	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1260422	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1260458	0.95[ASN][1000 genomes]
rs1260459	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1313570	0.95[ASN][1000 genomes]
rs13294	0.90[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs1614039	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1617829	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1625468	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1627235	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1631973	0.91[ASN][1000 genomes]
rs1694362	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1694363	0.85[ASN][1000 genomes]
rs1694364	0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1694369	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1694370	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1694375	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1694377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1694380	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1694381	0.97[ASN][1000 genomes]
rs1694385	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1694390	0.89[ASN][1000 genomes]
rs1747927	0.96[ASN][1000 genomes]
rs17596326	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17597088	0.83[ASN][1000 genomes]
rs1776273	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1776274	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1776276	0.94[ASN][1000 genomes]
rs1932934	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1972031	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2147324	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2264418	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274127	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2454285	0.95[ASN][1000 genomes]
rs2454286	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2477121	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2762860	0.85[ASN][1000 genomes]
rs2794614	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2794615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794678	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794679	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794681	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794682	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2794684	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2794685	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2797653	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2867893	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2867894	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2873669	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3125808	0.96[ASN][1000 genomes]
rs35057759	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3737240	0.88[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap]
rs3738487	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs3820544	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3896342	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4333886	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4446975	0.87[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4451552	0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs45595332	0.85[ASN][1000 genomes]
rs4581308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs471464	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs471738	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs486275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs488271	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4926394	0.91[ASN][1000 genomes]
rs4926395	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4926422	0.96[ASN][1000 genomes]
rs4926436	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4926437	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4970971	0.84[ASN][1000 genomes]
rs500812	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs509345	0.93[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.91[ASN][1000 genomes]
rs519126	0.95[ASN][1000 genomes]
rs521607	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs522435	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs543179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs55742549	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55823828	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56214461	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs578353	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs580060	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs580159	0.90[ASN][1000 genomes]
rs61819386	0.81[ASN][1000 genomes]
rs6662108	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6672808	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6685252	0.86[ASN][1000 genomes]
rs6703652	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs696616	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs696618	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs698913	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs698916	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs698918	0.93[ASN][1000 genomes]
rs698919	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs698923	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7002	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72696885	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72696900	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7511649	0.93[CHB][hapmap]
rs7512552	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];0.87[ASN][1000 genomes]
rs7513205	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[ASN][1000 genomes]
rs7517441	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7523428	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7538981	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7539458	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7548085	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7553867	0.83[ASN][1000 genomes]
rs7554686	0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs8006	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs828783	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832621	0.91[ASN][1000 genomes]
rs832622	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs834228	0.89[ASN][1000 genomes]
rs834229	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs834230	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs834231	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs834232	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs834233	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs834234	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs834236	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs834241	0.91[ASN][1000 genomes]
rs834242	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs834243	0.93[ASN][1000 genomes]
rs844309	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9435997	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9436007	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9436008	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9436108	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9436112	0.96[CEU][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9436115	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9436119	0.84[ASN][1000 genomes]
rs9436127	0.96[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs1498308	SNX27	cis	parietal	SCAN
rs1498308	CTSS	cis	cerebellum	SCAN
rs1498308	C1orf54	cis	parietal	SCAN
rs1498308	MRPS21	Cis_1M	lymphoblastoid	RTeQTL
rs1498308	SEC22B	cis	parietal	SCAN
rs1498308	POLR3GL	cis	cerebellum	SCAN
rs1498308	PER3	trans	lymphoblastoid	seeQTL
rs1498308	MRPS21	cis	cerebellum	SCAN
rs1498308	MRPS21	cis	parietal	SCAN
rs1498308	POGZ	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150293200-150295200	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr1:150293200-150295200	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr1:150293200-150295400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr1:150293200-150295400	Active TSS	A549	lung
5	chr1:150293400-150295200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:150293400-150295400	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr1:150293400-150295400	Active TSS	GM12878-XiMat	blood
8	chr1:150294000-150295200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr1:150294200-150295200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:150294200-150295400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr1:150294200-150295400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:150294400-150295200	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr1:150294400-150295200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr1:150294400-150295200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:150294400-150295200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr1:150294400-150295200	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr1:150294400-150295200	Flanking Active TSS	Liver	Liver
18	chr1:150294400-150295200	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr1:150294400-150295200	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr1:150294400-150295200	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr1:150294400-150295200	Flanking Active TSS	Fetal Brain Female	brain
22	chr1:150294400-150295200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr1:150294400-150295400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr1:150294400-150295400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr1:150294400-150295400	Flanking Active TSS	HUVEC	blood vessel
26	chr1:150294400-150295400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr1:150294600-150295200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:150294600-150295200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr1:150294600-150295200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr1:150294600-150295200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:150294600-150295200	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr1:150294600-150295200	Flanking Active TSS	Colon Smooth Muscle	Colon
33	chr1:150294600-150295200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr1:150294600-150295200	Flanking Active TSS	Fetal Kidney	kidney
35	chr1:150294600-150295200	Flanking Active TSS	Fetal Lung	lung
36	chr1:150294600-150295200	Flanking Active TSS	HSMM	muscle
37	chr1:150294600-150295200	Flanking Active TSS	NH-A	brain
38	chr1:150294600-150295200	Flanking Active TSS	Osteobl	bone
39	chr1:150294600-150295400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:150294600-150295400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr1:150294600-150295400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:150294600-150295400	Flanking Active TSS	Dnd41	blood
43	chr1:150294600-150295400	Flanking Active TSS	Hela-S3	cervix
44	chr1:150294600-150299200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:150294600-150301200	Weak transcription	Pancreas	Pancrea
46	chr1:150294800-150295200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
47	chr1:150294800-150295200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:150294800-150295200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:150294800-150295200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr1:150294800-150295200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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