Variant report

Variant	rs9498693
Chromosome Location	chr6:102216819-102216820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10485276	0.95[JPT][hapmap]
rs11156157	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11962789	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs1325060	0.87[CEU][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1340266	0.91[JPT][hapmap]
rs1361444	0.91[JPT][hapmap]
rs1361445	0.91[JPT][hapmap]
rs1361446	0.91[JPT][hapmap]
rs1408768	0.83[JPT][hapmap]
rs1555775	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1556993	0.91[JPT][hapmap]
rs17062480	0.91[ASN][1000 genomes]
rs1965603	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2246394	0.89[JPT][hapmap]
rs2399635	0.82[JPT][hapmap]
rs2399636	0.83[JPT][hapmap]
rs2518191	0.87[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs2518193	0.90[JPT][hapmap]
rs2518198	0.87[JPT][hapmap]
rs2518200	0.83[JPT][hapmap]
rs2518201	0.86[JPT][hapmap]
rs2518202	0.83[JPT][hapmap]
rs2518203	0.86[JPT][hapmap]
rs2518206	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs2518266	0.91[JPT][hapmap]
rs2518267	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2518268	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2764218	0.91[JPT][hapmap]
rs2764220	0.91[JPT][hapmap]
rs2764222	0.82[JPT][hapmap]
rs2764224	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs2764225	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2764226	0.81[JPT][hapmap]
rs2764228	0.91[JPT][hapmap]
rs2764230	0.83[JPT][hapmap]
rs2764231	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2764233	0.83[JPT][hapmap]
rs2764236	0.91[JPT][hapmap]
rs2791812	0.91[JPT][hapmap]
rs2791813	0.85[CEU][hapmap]
rs2791817	0.85[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2791818	0.82[JPT][hapmap]
rs2791819	0.86[JPT][hapmap]
rs2791821	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2791823	0.82[JPT][hapmap]
rs2791827	0.86[JPT][hapmap]
rs2791832	0.87[JPT][hapmap]
rs2791837	0.83[JPT][hapmap]
rs2852573	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs2852574	0.91[JPT][hapmap]
rs2852576	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4839802	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4839803	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4839804	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4840195	0.91[JPT][hapmap]
rs4840196	0.91[JPT][hapmap]
rs4840197	0.85[CEU][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4840198	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs4840199	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs6922753	0.91[JPT][hapmap]
rs7749469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7775085	0.96[ASN][1000 genomes]
rs7775876	0.82[ASN][1000 genomes]
rs9322609	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322611	0.83[JPT][hapmap]
rs9322613	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9377306	0.91[JPT][hapmap]
rs9377308	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs9377314	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9377315	0.85[CEU][hapmap]
rs9386291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386294	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9390784	0.84[ASN][1000 genomes]
rs9390785	0.81[ASN][1000 genomes]
rs9390788	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9399728	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9399732	0.91[JPT][hapmap]
rs9399733	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9404143	0.99[ASN][1000 genomes]
rs9404145	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9404148	0.91[JPT][hapmap]
rs9404152	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9404153	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs9485542	0.96[ASN][1000 genomes]
rs9498691	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9498694	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498695	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9498696	0.96[ASN][1000 genomes]
rs9498697	0.96[ASN][1000 genomes]
rs9498698	0.91[ASN][1000 genomes]
rs9498701	0.91[JPT][hapmap]
rs9498703	0.86[ASN][1000 genomes]
rs9498713	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9498727	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102207400-102217800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:102209200-102217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:102213400-102217400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:102214800-102224800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:102215000-102217600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:102215200-102217000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:102215200-102217000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:102215200-102217600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:102215200-102217600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:102215400-102217000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:102215400-102217600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:102215800-102217600	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links