Variant report

Variant	rs9674851
Chromosome Location	chr17:34082398-34082399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:34081789-34082461	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34079887..34082780-chr17:34083495..34086250,2	K562	blood:
2	chr17:34075065..34077539-chr17:34081215..34083292,2	K562	blood:

Variant related genes	Relation type
GAS2L2	TF binding region
ENSG00000266911	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1065341	1.00[CEU][hapmap]
rs11080356	1.00[JPT][hapmap]
rs16963927	1.00[CEU][hapmap]
rs16971600	1.00[CEU][hapmap]
rs16971620	1.00[CEU][hapmap]
rs16971624	1.00[CEU][hapmap]
rs17550632	1.00[JPT][hapmap]
rs17550716	1.00[JPT][hapmap]
rs17638867	1.00[JPT][hapmap]
rs2011897	1.00[JPT][hapmap]
rs225244	1.00[JPT][hapmap]
rs225246	1.00[JPT][hapmap]
rs225268	1.00[JPT][hapmap]
rs225276	1.00[JPT][hapmap]
rs225278	1.00[JPT][hapmap]
rs225279	1.00[JPT][hapmap]
rs225285	1.00[JPT][hapmap]
rs226089	1.00[JPT][hapmap]
rs226090	1.00[JPT][hapmap]
rs2735482	1.00[CEU][hapmap]
rs4251744	0.89[EUR][1000 genomes]
rs4251776	1.00[CEU][hapmap]
rs4795086	1.00[JPT][hapmap]
rs4796098	1.00[JPT][hapmap]
rs7209512	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7211724	1.00[JPT][hapmap]
rs8073456	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs9649	1.00[JPT][hapmap]
rs965984	1.00[CEU][hapmap]
rs9895464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9896368	0.87[ASW][hapmap];0.98[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9898128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34080200-34083000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr17:34080600-34087400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr17:34082200-34082400	Enhancers	Pancreas	Pancrea

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