Variant report
| Variant | rs9895464 |
|---|---|
| Chromosome Location | chr17:34081910-34081911 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr17:34081789-34082461 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| GAS2L2 | TF binding region |
| ENSG00000266911 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1065341 | 1.00[CEU][hapmap] |
| rs11080356 | 1.00[JPT][hapmap] |
| rs16963927 | 1.00[CEU][hapmap] |
| rs16971600 | 1.00[CEU][hapmap] |
| rs16971620 | 1.00[CEU][hapmap] |
| rs16971624 | 1.00[CEU][hapmap] |
| rs17550632 | 1.00[JPT][hapmap] |
| rs17550716 | 1.00[JPT][hapmap] |
| rs17638867 | 1.00[JPT][hapmap] |
| rs2011897 | 1.00[JPT][hapmap] |
| rs225244 | 1.00[JPT][hapmap] |
| rs225246 | 1.00[JPT][hapmap] |
| rs225268 | 1.00[JPT][hapmap] |
| rs225276 | 1.00[JPT][hapmap] |
| rs225278 | 1.00[JPT][hapmap] |
| rs225279 | 1.00[JPT][hapmap] |
| rs225285 | 1.00[JPT][hapmap] |
| rs226089 | 1.00[JPT][hapmap] |
| rs226090 | 1.00[JPT][hapmap] |
| rs2735482 | 1.00[CEU][hapmap] |
| rs4251744 | 0.89[EUR][1000 genomes] |
| rs4251776 | 1.00[CEU][hapmap] |
| rs4795086 | 1.00[JPT][hapmap] |
| rs4796098 | 1.00[JPT][hapmap] |
| rs7209512 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs7211724 | 1.00[JPT][hapmap] |
| rs8073456 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes] |
| rs9649 | 1.00[JPT][hapmap] |
| rs965984 | 1.00[CEU][hapmap] |
| rs9674851 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9896368 | 0.92[YRI][hapmap] |
| rs9898128 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9914929 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534371 | chr17:33456878-34094068 | Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 137 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:34080200-34083000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 2 | chr17:34080400-34082200 | Weak transcription | Pancreas | Pancrea |
| 3 | chr17:34080600-34087400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
