Variant report

Variant	rs10085545
Chromosome Location	chr7:120622874-120622875
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120622360..120624789-chr7:120627445..120629429,3	K562	blood:
2	chr7:120622642..120624338-chr7:120624667..120626865,2	K562	blood:
3	chr7:120621518..120649031-chr7:120712706..120728931,108	K562	blood:

Variant related genes	Relation type
ENSG00000106034	Chromatin interaction
ENSG00000212628	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10085399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10156133	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10228463	1.00[AMR][1000 genomes]
rs10231429	1.00[AMR][1000 genomes]
rs10239339	1.00[AMR][1000 genomes]
rs10241872	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10243869	1.00[AMR][1000 genomes]
rs10256185	1.00[AMR][1000 genomes]
rs10260155	1.00[AMR][1000 genomes]
rs10269373	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs10277685	1.00[AMR][1000 genomes]
rs10281679	1.00[AMR][1000 genomes]
rs12531744	1.00[AMR][1000 genomes]
rs12537910	1.00[AMR][1000 genomes]
rs12538483	1.00[AMR][1000 genomes]
rs12539312	1.00[AMR][1000 genomes]
rs12539365	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12540028	1.00[AMR][1000 genomes]
rs12540031	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28366865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28545438	1.00[AMR][1000 genomes]
rs28582920	1.00[AMR][1000 genomes]
rs28627810	1.00[AMR][1000 genomes]
rs28676720	1.00[AMR][1000 genomes]
rs28696320	1.00[AMR][1000 genomes]
rs6946429	1.00[AMR][1000 genomes]
rs6955429	1.00[ASW][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap]
rs6959281	1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	1.00[AMR][1000 genomes]
rs7791680	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831114	chr7:120595624-120804510	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120591600-120627800	Weak transcription	Pancreas	Pancrea
2	chr7:120592400-120628000	Weak transcription	Stomach Mucosa	stomach
3	chr7:120608600-120627600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:120609400-120627800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:120609400-120627800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:120609400-120628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:120611600-120624000	Weak transcription	Fetal Brain Male	brain
8	chr7:120611600-120626200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:120611600-120627400	Weak transcription	Brain Angular Gyrus	brain
10	chr7:120611600-120627600	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:120611600-120627600	Weak transcription	Fetal Stomach	stomach
12	chr7:120611600-120627800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:120611600-120627800	Weak transcription	Esophagus	oesophagus
14	chr7:120611600-120627800	Weak transcription	Thymus	Thymus
15	chr7:120615000-120627600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:120615400-120627800	Weak transcription	Colonic Mucosa	Colon
17	chr7:120615400-120628000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:120615600-120624400	Weak transcription	Hela-S3	cervix
19	chr7:120615600-120627400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr7:120615600-120627600	Weak transcription	Brain Anterior Caudate	brain
21	chr7:120615600-120627800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:120615600-120627800	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:120615600-120627800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr7:120615600-120628000	Weak transcription	Small Intestine	intestine
25	chr7:120615800-120627800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:120616000-120627400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:120616000-120627600	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:120616200-120627400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:120616200-120627400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:120616200-120627400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:120616200-120627800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:120616200-120627800	Weak transcription	Fetal Intestine Large	intestine
33	chr7:120616600-120627600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:120616600-120627600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:120616800-120628000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:120617000-120627000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:120617000-120627800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr7:120617000-120627800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:120617200-120627800	Weak transcription	Adipose Nuclei	Adipose
40	chr7:120617200-120627800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:120617200-120627800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:120617200-120627800	Weak transcription	Left Ventricle	heart
43	chr7:120617400-120624800	Weak transcription	Primary B cells from peripheral blood	blood
44	chr7:120617400-120627800	Weak transcription	Liver	Liver
45	chr7:120617400-120627800	Weak transcription	Placenta	Placenta
46	chr7:120617400-120627800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr7:120617400-120627800	Weak transcription	HUVEC	blood vessel
48	chr7:120618000-120627800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr7:120619200-120623000	Enhancers	NHDF-Ad	bronchial
50	chr7:120619600-120623200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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