Variant report
| Variant | rs10256185 |
|---|---|
| Chromosome Location | chr7:120537945-120537946 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000071243 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10085399 | 1.00[AMR][1000 genomes] |
| rs10085545 | 1.00[AMR][1000 genomes] |
| rs10156133 | 1.00[AMR][1000 genomes] |
| rs10228463 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10231429 | 1.00[AMR][1000 genomes] |
| rs10239339 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10241872 | 1.00[AMR][1000 genomes] |
| rs10243869 | 1.00[AMR][1000 genomes] |
| rs10249042 | 0.80[AFR][1000 genomes] |
| rs10260155 | 1.00[AMR][1000 genomes] |
| rs10269373 | 1.00[AMR][1000 genomes] |
| rs10277685 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10281679 | 1.00[AMR][1000 genomes] |
| rs12531744 | 1.00[AMR][1000 genomes] |
| rs12537910 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12538483 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12539312 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12539365 | 1.00[AMR][1000 genomes] |
| rs12540028 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12540031 | 1.00[AMR][1000 genomes] |
| rs28366865 | 1.00[AMR][1000 genomes] |
| rs28545438 | 1.00[AMR][1000 genomes] |
| rs28582920 | 1.00[AMR][1000 genomes] |
| rs28627810 | 1.00[AMR][1000 genomes] |
| rs28676720 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28696320 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6946429 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6959281 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6966333 | 1.00[AMR][1000 genomes] |
| rs6970044 | 1.00[AMR][1000 genomes] |
| rs7791680 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1818826 | chr7:120405335-120622836 | Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | esv274964 | chr7:120522471-120549440 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv996482 | chr7:120537115-120544155 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:120535800-120540800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
