Variant report

Variant	rs10231429
Chromosome Location	chr7:120435026-120435027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120431064..120435276-chr7:120437934..120440347,4	K562	blood:
2	chr7:120433218..120435553-chr7:120523019..120525644,2	K562	blood:
3	chr7:120425607..120427372-chr7:120434599..120436896,2	K562	blood:
4	chr7:120378952..120380613-chr7:120434028..120436380,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10085399	1.00[AMR][1000 genomes]
rs10085545	1.00[AMR][1000 genomes]
rs10156133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227371	1.00[AMR][1000 genomes]
rs10228463	1.00[AMR][1000 genomes]
rs10239339	1.00[AMR][1000 genomes]
rs10241872	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243869	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249042	0.85[AFR][1000 genomes]
rs10256185	1.00[AMR][1000 genomes]
rs10260155	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269373	1.00[AMR][1000 genomes]
rs10277685	1.00[AMR][1000 genomes]
rs10281679	1.00[AMR][1000 genomes]
rs12531744	1.00[AMR][1000 genomes]
rs12537910	1.00[AMR][1000 genomes]
rs12538483	1.00[AMR][1000 genomes]
rs12539312	1.00[AMR][1000 genomes]
rs12539365	1.00[AMR][1000 genomes]
rs12540028	1.00[AMR][1000 genomes]
rs12540031	1.00[AMR][1000 genomes]
rs28366865	1.00[AMR][1000 genomes]
rs28545438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28582920	1.00[AMR][1000 genomes]
rs28627810	1.00[AMR][1000 genomes]
rs28676720	1.00[AMR][1000 genomes]
rs28696320	1.00[AMR][1000 genomes]
rs6946429	1.00[AMR][1000 genomes]
rs6959281	1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120423000-120449200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:120425600-120470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:120425800-120437600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:120425800-120454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:120426600-120442000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:120427400-120466000	Weak transcription	Fetal Stomach	stomach
7	chr7:120427800-120438400	Weak transcription	Aorta	Aorta
8	chr7:120428400-120440400	Weak transcription	Fetal Intestine Small	intestine
9	chr7:120429200-120445600	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:120429400-120437200	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:120430200-120437200	Weak transcription	Liver	Liver
12	chr7:120430400-120468200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:120432400-120436000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:120432400-120442200	Weak transcription	Right Ventricle	heart
15	chr7:120432600-120437200	Weak transcription	Fetal Intestine Large	intestine
16	chr7:120432600-120438000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:120432600-120438200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:120432600-120438800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:120432600-120444600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:120432600-120453800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:120432600-120455400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:120432600-120468400	Weak transcription	Lung	lung
23	chr7:120432800-120435800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:120432800-120438800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:120433200-120437000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:120433200-120446000	Weak transcription	Fetal Kidney	kidney
27	chr7:120434600-120436200	Weak transcription	Left Ventricle	heart
28	chr7:120434800-120436000	Weak transcription	Fetal Heart	heart

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