Variant report

Variant	rs28676720
Chromosome Location	chr7:120515564-120515565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10085399	1.00[AMR][1000 genomes]
rs10085545	1.00[AMR][1000 genomes]
rs10156133	1.00[AMR][1000 genomes]
rs10227371	1.00[AMR][1000 genomes]
rs10228463	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231429	1.00[AMR][1000 genomes]
rs10239339	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241872	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243869	1.00[AMR][1000 genomes]
rs10249042	0.82[AFR][1000 genomes]
rs10256185	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260155	1.00[AMR][1000 genomes]
rs10269373	1.00[AMR][1000 genomes]
rs10277685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281679	1.00[AMR][1000 genomes]
rs12531744	1.00[AMR][1000 genomes]
rs12537910	1.00[AMR][1000 genomes]
rs12538483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539312	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539365	1.00[AMR][1000 genomes]
rs12540028	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540031	1.00[AMR][1000 genomes]
rs28366865	1.00[AMR][1000 genomes]
rs28545438	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28582920	1.00[AMR][1000 genomes]
rs28627810	1.00[AMR][1000 genomes]
rs28696320	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946429	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959281	1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120508600-120518200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:120512000-120521800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:120515200-120516200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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