Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:120577684..120579807-chr7:120581325..120584070,2	K562	blood:
2	chr7:120582973..120587570-chr7:120719112..120724083,6	K562	blood:
3	chr7:120497411..120498960-chr7:120582956..120584849,2	K562	blood:
4	chr7:120581362..120584073-chr7:120588812..120591206,3	MCF-7	breast:
5	chr7:120578692..120580456-chr7:120583647..120585611,2	K562	blood:
6	chr7:120572871..120575820-chr7:120582834..120585642,2	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10085399	1.00[AMR][1000 genomes]
rs10085545	1.00[AMR][1000 genomes]
rs10156133	1.00[AMR][1000 genomes]
rs10228463	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231429	1.00[AMR][1000 genomes]
rs10239339	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241872	1.00[AMR][1000 genomes]
rs10243869	1.00[AMR][1000 genomes]
rs10256185	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260155	1.00[AMR][1000 genomes]
rs10269373	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277685	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281679	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12531744	0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12537910	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12538483	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539365	0.80[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540031	1.00[AMR][1000 genomes]
rs28366865	1.00[AMR][1000 genomes]
rs28545438	1.00[AMR][1000 genomes]
rs28582920	1.00[AMR][1000 genomes]
rs28627810	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676720	1.00[AMR][1000 genomes]
rs28696320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	1.00[AMR][1000 genomes]
rs7791680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv967472	chr7:120581340-120591647	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120574000-120585200	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:120582000-120585000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:120582200-120585000	Weak transcription	Liver	Liver
4	chr7:120582200-120588600	Weak transcription	K562	blood
5	chr7:120582400-120585400	Enhancers	HUVEC	blood vessel
6	chr7:120583600-120584000	Enhancers	Fetal Kidney	kidney
7	chr7:120583800-120585200	Weak transcription	Fetal Intestine Large	intestine

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