Variant report

Variant	rs28582920
Chromosome Location	chr7:120608285-120608286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120607581..120609685-chr7:120722542..120724761,2	K562	blood:
2	chr7:120588468..120596180-chr7:120604298..120610010,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212628	Chromatin interaction
ENSG00000071243	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10085399	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10085545	1.00[AMR][1000 genomes]
rs10156133	1.00[AMR][1000 genomes]
rs10228463	1.00[AMR][1000 genomes]
rs10231429	1.00[AMR][1000 genomes]
rs10239339	1.00[AMR][1000 genomes]
rs10241872	1.00[AMR][1000 genomes]
rs10243869	1.00[AMR][1000 genomes]
rs10256185	1.00[AMR][1000 genomes]
rs10260155	1.00[AMR][1000 genomes]
rs10269373	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277685	1.00[AMR][1000 genomes]
rs10281679	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12531744	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12537910	1.00[AMR][1000 genomes]
rs12538483	1.00[AMR][1000 genomes]
rs12539312	1.00[AMR][1000 genomes]
rs12539365	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540028	1.00[AMR][1000 genomes]
rs12540031	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28366865	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28545438	1.00[AMR][1000 genomes]
rs28627810	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676720	1.00[AMR][1000 genomes]
rs28696320	1.00[AMR][1000 genomes]
rs6946429	1.00[AMR][1000 genomes]
rs6955429	0.94[AFR][1000 genomes]
rs6959281	1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	1.00[AMR][1000 genomes]
rs7791680	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831114	chr7:120595624-120804510	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120591600-120611200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:120591600-120612800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:120591600-120613200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:120591600-120613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:120591600-120627800	Weak transcription	Pancreas	Pancrea
6	chr7:120591800-120618600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:120592200-120611000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:120592400-120614800	Weak transcription	Small Intestine	intestine
9	chr7:120592400-120617000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr7:120592400-120618600	Weak transcription	Right Ventricle	heart
11	chr7:120592400-120621600	Weak transcription	Aorta	Aorta
12	chr7:120592400-120628000	Weak transcription	Stomach Mucosa	stomach
13	chr7:120594800-120609000	Weak transcription	NH-A	brain
14	chr7:120595000-120610800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:120599600-120616200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:120600400-120609000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:120601800-120613000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:120602600-120617200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:120602800-120615800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr7:120603000-120618000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:120603200-120618000	Strong transcription	Fetal Thymus	thymus
22	chr7:120603400-120617200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:120603600-120615400	Strong transcription	K562	blood
24	chr7:120603600-120616800	Strong transcription	Dnd41	blood
25	chr7:120604200-120609400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr7:120604200-120613000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:120604200-120615800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:120604200-120617000	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:120604400-120616800	Strong transcription	Primary hematopoietic stem cells	blood
30	chr7:120604400-120617000	Strong transcription	Primary B cells from cord blood	blood
31	chr7:120604400-120617000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:120604400-120617200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:120604400-120617400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr7:120604400-120621800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:120604600-120609600	Strong transcription	Primary T cells from cord blood	blood
36	chr7:120604600-120613400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:120604600-120615200	Strong transcription	GM12878-XiMat	blood
38	chr7:120604600-120615400	Strong transcription	Fetal Brain Female	brain
39	chr7:120604600-120615600	Strong transcription	Osteobl	bone
40	chr7:120604600-120616000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr7:120604600-120617000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr7:120604600-120617400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:120604600-120617400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr7:120604600-120617400	Strong transcription	Liver	Liver
45	chr7:120604600-120617400	Strong transcription	HSMM	muscle
46	chr7:120604800-120608600	Strong transcription	Rectal Smooth Muscle	rectum
47	chr7:120604800-120608800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:120604800-120609400	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr7:120604800-120609600	Strong transcription	Brain Anterior Caudate	brain
50	chr7:120604800-120611600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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