Variant report

Variant	rs10269373
Chromosome Location	chr7:120594199-120594200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120590106..120593408-chr7:120593981..120596581,5	MCF-7	breast:
2	chr7:120588468..120596180-chr7:120604298..120610010,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071243	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10085399	1.00[AMR][1000 genomes]
rs10085545	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs10156133	1.00[AMR][1000 genomes]
rs10228463	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231429	1.00[AMR][1000 genomes]
rs10239339	1.00[AMR][1000 genomes]
rs10241872	1.00[AMR][1000 genomes]
rs10243869	1.00[AMR][1000 genomes]
rs10256185	1.00[AMR][1000 genomes]
rs10258610	0.82[YRI][hapmap]
rs10260155	1.00[AMR][1000 genomes]
rs10277685	1.00[AMR][1000 genomes]
rs10281679	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12531744	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12537910	1.00[AMR][1000 genomes]
rs12538483	1.00[AMR][1000 genomes]
rs12539312	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539365	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540028	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540031	1.00[AMR][1000 genomes]
rs28366865	1.00[AMR][1000 genomes]
rs28545438	1.00[AMR][1000 genomes]
rs28582920	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676720	1.00[AMR][1000 genomes]
rs28696320	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946429	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6955429	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs6959281	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	1.00[AMR][1000 genomes]
rs7791680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120591600-120596400	Weak transcription	Left Ventricle	heart
2	chr7:120591600-120600200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:120591600-120606600	Weak transcription	Lung	lung
4	chr7:120591600-120608000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:120591600-120608000	Weak transcription	Esophagus	oesophagus
6	chr7:120591600-120608000	Weak transcription	Gastric	stomach
7	chr7:120591600-120608000	Weak transcription	Spleen	Spleen
8	chr7:120591600-120611200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:120591600-120612800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:120591600-120613200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:120591600-120613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:120591600-120627800	Weak transcription	Pancreas	Pancrea
13	chr7:120591800-120594400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:120591800-120606400	Weak transcription	Ovary	ovary
15	chr7:120591800-120618600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:120592000-120594200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:120592000-120596800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:120592200-120595200	Weak transcription	Colonic Mucosa	Colon
19	chr7:120592200-120595400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:120592200-120597000	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:120592200-120597600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:120592200-120598400	Weak transcription	Thymus	Thymus
23	chr7:120592200-120599400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:120592200-120599600	Strong transcription	Fetal Thymus	thymus
25	chr7:120592200-120611000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:120592400-120594200	Weak transcription	Adipose Nuclei	Adipose
27	chr7:120592400-120594200	Weak transcription	Fetal Intestine Small	intestine
28	chr7:120592400-120594400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:120592400-120594400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:120592400-120594400	Weak transcription	Brain Germinal Matrix	brain
31	chr7:120592400-120594400	Weak transcription	HMEC	breast
32	chr7:120592400-120594600	Weak transcription	Brain Anterior Caudate	brain
33	chr7:120592400-120594800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:120592400-120595200	Weak transcription	NHLF	lung
35	chr7:120592400-120595600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:120592400-120595600	Weak transcription	Fetal Brain Female	brain
37	chr7:120592400-120595600	Weak transcription	Hela-S3	cervix
38	chr7:120592400-120595600	Weak transcription	HepG2	liver
39	chr7:120592400-120595800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:120592400-120597600	Weak transcription	Brain Angular Gyrus	brain
41	chr7:120592400-120598600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr7:120592400-120598600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:120592400-120599400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:120592400-120600200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr7:120592400-120606400	Weak transcription	Fetal Brain Male	brain
46	chr7:120592400-120606400	Weak transcription	NHEK	skin
47	chr7:120592400-120607800	Weak transcription	HSMMtube	muscle
48	chr7:120592400-120608000	Weak transcription	Psoas Muscle	Psoas
49	chr7:120592400-120614800	Weak transcription	Small Intestine	intestine
50	chr7:120592400-120617000	Strong transcription	Primary monocytes fromperipheralblood	blood

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