Variant report

Variant	rs12539312
Chromosome Location	chr7:120565110-120565111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120564595..120568185-chr7:120568681..120572482,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10085399	1.00[AMR][1000 genomes]
rs10085545	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10156133	0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10228463	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231429	1.00[AMR][1000 genomes]
rs10239339	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241872	0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10243869	1.00[AMR][1000 genomes]
rs10249042	0.80[AFR][1000 genomes]
rs10256185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260155	1.00[AMR][1000 genomes]
rs10269373	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277685	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281679	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12531744	0.80[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12537910	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12538483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539365	0.90[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540031	1.00[AMR][1000 genomes]
rs28366865	1.00[AMR][1000 genomes]
rs28545438	1.00[AMR][1000 genomes]
rs28582920	1.00[AMR][1000 genomes]
rs28627810	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676720	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28696320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6955429	0.86[LWK][hapmap];1.00[MEX][hapmap]
rs6959281	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	0.85[LWK][hapmap];1.00[AMR][1000 genomes]
rs7791680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120556000-120567200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120562800-120566400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:120562800-120566600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:120562800-120566600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:120562800-120566800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:120562800-120567000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:120565000-120565800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links