Variant report

Variant	rs10281679
Chromosome Location	chr7:120597147-120597148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120596918..120600663-chr7:120601555..120604578,6	MCF-7	breast:
2	chr7:120439909..120442311-chr7:120595170..120598046,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10085399	1.00[AMR][1000 genomes]
rs10085545	1.00[AMR][1000 genomes]
rs10156133	1.00[AMR][1000 genomes]
rs10228463	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231429	1.00[AMR][1000 genomes]
rs10239339	1.00[AMR][1000 genomes]
rs10241872	1.00[AMR][1000 genomes]
rs10243869	1.00[AMR][1000 genomes]
rs10256185	1.00[AMR][1000 genomes]
rs10260155	1.00[AMR][1000 genomes]
rs10269373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277685	1.00[AMR][1000 genomes]
rs12531744	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12537910	1.00[AMR][1000 genomes]
rs12538483	1.00[AMR][1000 genomes]
rs12539312	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540028	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12540031	1.00[AMR][1000 genomes]
rs28366865	1.00[AMR][1000 genomes]
rs28545438	1.00[AMR][1000 genomes]
rs28582920	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627810	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676720	1.00[AMR][1000 genomes]
rs28696320	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946429	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6955429	0.80[AFR][1000 genomes]
rs6959281	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	1.00[AMR][1000 genomes]
rs7791680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831114	chr7:120595624-120804510	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120591600-120600200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:120591600-120606600	Weak transcription	Lung	lung
3	chr7:120591600-120608000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:120591600-120608000	Weak transcription	Esophagus	oesophagus
5	chr7:120591600-120608000	Weak transcription	Gastric	stomach
6	chr7:120591600-120608000	Weak transcription	Spleen	Spleen
7	chr7:120591600-120611200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:120591600-120612800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:120591600-120613200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:120591600-120613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:120591600-120627800	Weak transcription	Pancreas	Pancrea
12	chr7:120591800-120606400	Weak transcription	Ovary	ovary
13	chr7:120591800-120618600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:120592200-120597600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:120592200-120598400	Weak transcription	Thymus	Thymus
16	chr7:120592200-120599400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:120592200-120599600	Strong transcription	Fetal Thymus	thymus
18	chr7:120592200-120611000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:120592400-120597600	Weak transcription	Brain Angular Gyrus	brain
20	chr7:120592400-120598600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:120592400-120598600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:120592400-120599400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:120592400-120600200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr7:120592400-120606400	Weak transcription	Fetal Brain Male	brain
25	chr7:120592400-120606400	Weak transcription	NHEK	skin
26	chr7:120592400-120607800	Weak transcription	HSMMtube	muscle
27	chr7:120592400-120608000	Weak transcription	Psoas Muscle	Psoas
28	chr7:120592400-120614800	Weak transcription	Small Intestine	intestine
29	chr7:120592400-120617000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr7:120592400-120618600	Weak transcription	Right Ventricle	heart
31	chr7:120592400-120621600	Weak transcription	Aorta	Aorta
32	chr7:120592400-120628000	Weak transcription	Stomach Mucosa	stomach
33	chr7:120592600-120597600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:120592800-120597200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:120592800-120598000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:120593000-120599600	Strong transcription	Placenta	Placenta
37	chr7:120593000-120604600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:120593000-120606400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr7:120593200-120599000	Weak transcription	Fetal Heart	heart
40	chr7:120593200-120599400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:120593200-120599400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr7:120593200-120599600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:120593200-120599800	Strong transcription	HSMM	muscle
44	chr7:120593200-120599800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr7:120593400-120597200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:120593400-120597200	Strong transcription	HUVEC	blood vessel
47	chr7:120593400-120597400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:120593400-120597600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:120593400-120597800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:120593400-120597800	Strong transcription	Osteobl	bone

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