Variant report

Variant	rs10156133
Chromosome Location	chr7:120433770-120433771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120431064..120435276-chr7:120437934..120440347,4	K562	blood:
2	chr7:120431634..120433947-chr7:120435928..120437734,2	K562	blood:
3	chr7:120433218..120435553-chr7:120523019..120525644,2	K562	blood:
4	chr7:120431063..120433784-chr7:120719676..120721817,4	K562	blood:
5	chr7:120432846..120434938-chr7:120584333..120586635,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10085399	1.00[AMR][1000 genomes]
rs10085545	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10224694	1.00[YRI][hapmap]
rs10227371	1.00[AMR][1000 genomes]
rs10228463	1.00[AMR][1000 genomes]
rs10231429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239339	1.00[AMR][1000 genomes]
rs10241872	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243869	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249042	0.85[AFR][1000 genomes]
rs10256185	1.00[AMR][1000 genomes]
rs10260155	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262473	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs10269373	1.00[AMR][1000 genomes]
rs10277685	1.00[AMR][1000 genomes]
rs10281679	1.00[AMR][1000 genomes]
rs12531744	1.00[AMR][1000 genomes]
rs12537910	1.00[AMR][1000 genomes]
rs12538483	1.00[AMR][1000 genomes]
rs12539312	1.00[AMR][1000 genomes]
rs12539365	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12540028	1.00[AMR][1000 genomes]
rs12540031	1.00[AMR][1000 genomes]
rs28366865	1.00[AMR][1000 genomes]
rs28545438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28582920	1.00[AMR][1000 genomes]
rs28627810	1.00[AMR][1000 genomes]
rs28676720	1.00[AMR][1000 genomes]
rs28696320	1.00[AMR][1000 genomes]
rs6946429	1.00[AMR][1000 genomes]
rs6959281	1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971715	1.00[MEX][hapmap]
rs7791680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10156133	NCRNA00174	trans	lymphoblastoid	seeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120423000-120449200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:120425600-120434400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:120425600-120434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:120425600-120470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:120425800-120434800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:120425800-120437600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:120425800-120454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:120426600-120442000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:120427400-120466000	Weak transcription	Fetal Stomach	stomach
10	chr7:120427800-120438400	Weak transcription	Aorta	Aorta
11	chr7:120428400-120440400	Weak transcription	Fetal Intestine Small	intestine
12	chr7:120429200-120445600	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:120429400-120434000	Weak transcription	Left Ventricle	heart
14	chr7:120429400-120437200	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:120430200-120437200	Weak transcription	Liver	Liver
16	chr7:120430400-120468200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:120432400-120434800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:120432400-120434800	Enhancers	HMEC	breast
19	chr7:120432400-120436000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:120432400-120442200	Weak transcription	Right Ventricle	heart
21	chr7:120432600-120434200	Weak transcription	Right Atrium	heart
22	chr7:120432600-120434400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:120432600-120434600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:120432600-120437200	Weak transcription	Fetal Intestine Large	intestine
25	chr7:120432600-120438000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:120432600-120438200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:120432600-120438800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:120432600-120444600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:120432600-120453800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:120432600-120455400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:120432600-120468400	Weak transcription	Lung	lung
32	chr7:120432800-120434200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:120432800-120434400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:120432800-120434400	Weak transcription	Gastric	stomach
35	chr7:120432800-120435800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:120432800-120438800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:120433000-120434000	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr7:120433200-120437000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:120433200-120446000	Weak transcription	Fetal Kidney	kidney
40	chr7:120433400-120434400	Weak transcription	Fetal Heart	heart

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