Variant report

Variant	rs10260155
Chromosome Location	chr7:120450726-120450727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120445313..120447921-chr7:120448553..120451279,2	K562	blood:
2	chr7:120450263..120451894-chr7:120453543..120455198,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10085399	1.00[AMR][1000 genomes]
rs10085545	1.00[AMR][1000 genomes]
rs10156133	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224694	1.00[YRI][hapmap]
rs10227371	1.00[AMR][1000 genomes]
rs10228463	1.00[AMR][1000 genomes]
rs10231429	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239339	1.00[AMR][1000 genomes]
rs10241872	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243869	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249042	0.85[AFR][1000 genomes]
rs10256185	1.00[AMR][1000 genomes]
rs10269373	1.00[AMR][1000 genomes]
rs10277685	1.00[AMR][1000 genomes]
rs10281679	1.00[AMR][1000 genomes]
rs12531744	1.00[AMR][1000 genomes]
rs12537910	1.00[AMR][1000 genomes]
rs12538483	1.00[AMR][1000 genomes]
rs12539312	1.00[AMR][1000 genomes]
rs12539365	1.00[AMR][1000 genomes]
rs12540028	1.00[AMR][1000 genomes]
rs12540031	1.00[AMR][1000 genomes]
rs28366865	1.00[AMR][1000 genomes]
rs28545438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28582920	1.00[AMR][1000 genomes]
rs28627810	1.00[AMR][1000 genomes]
rs28676720	1.00[AMR][1000 genomes]
rs28696320	1.00[AMR][1000 genomes]
rs6946429	1.00[AMR][1000 genomes]
rs6959281	1.00[AMR][1000 genomes]
rs6966333	1.00[AMR][1000 genomes]
rs6970044	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791680	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120425600-120470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:120425800-120454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:120427400-120466000	Weak transcription	Fetal Stomach	stomach
4	chr7:120430400-120468200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:120432600-120453800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:120432600-120455400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:120432600-120468400	Weak transcription	Lung	lung
8	chr7:120439200-120457800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:120439400-120469200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:120441200-120452600	Weak transcription	Fetal Intestine Small	intestine
11	chr7:120442600-120457400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:120443000-120488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:120444000-120457400	Weak transcription	Adipose Nuclei	Adipose
14	chr7:120445200-120494400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:120446000-120476200	Weak transcription	Left Ventricle	heart
16	chr7:120446400-120457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:120446800-120462200	Weak transcription	GM12878-XiMat	blood
18	chr7:120447000-120451600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:120447400-120471400	Weak transcription	Fetal Kidney	kidney
20	chr7:120447800-120453600	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:120447800-120465600	Weak transcription	Liver	Liver
22	chr7:120448400-120457400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:120449000-120451200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:120449200-120450800	Enhancers	Fetal Heart	heart
25	chr7:120449400-120451200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr7:120449600-120451200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr7:120449600-120452600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:120449800-120451400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:120449800-120457600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:120449800-120476000	Weak transcription	HUVEC	blood vessel
31	chr7:120450000-120453800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr7:120450600-120454200	Weak transcription	Fetal Intestine Large	intestine
33	chr7:120450600-120454800	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:120450600-120470400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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