Variant report

Variant	rs10100830
Chromosome Location	chr8:129893934-129893935
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129890413..129893226-chr8:129893231..129894881,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10094336	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10098392	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989639	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372451	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519849	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519850	0.92[ASN][1000 genomes]
rs1519851	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850889	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1914998	0.90[EUR][1000 genomes]
rs2056314	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2119756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395855	0.92[EUR][1000 genomes]
rs2395864	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395865	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568584	0.81[ASN][1000 genomes]
rs4628229	0.92[ASN][1000 genomes]
rs4733532	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733659	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470666	0.94[EUR][1000 genomes]
rs6470669	0.95[EUR][1000 genomes]
rs6470670	0.92[ASN][1000 genomes]
rs66941142	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994811	0.85[EUR][1000 genomes]
rs7010446	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7018093	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756122	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815713	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7841974	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9283956	0.82[EUR][1000 genomes]
rs9297778	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10100830	HHLA1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129881600-129894200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:129887200-129894000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:129887400-129894800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:129887400-129896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:129890400-129895800	Weak transcription	NHLF	lung
6	chr8:129890600-129894200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:129890800-129894200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:129893000-129897000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:129893000-129897000	Enhancers	NHDF-Ad	bronchial
10	chr8:129893600-129896600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:129893800-129896400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:129893800-129896800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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