Variant report

Variant	rs1850889
Chromosome Location	chr8:129890405-129890406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10094336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098392	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10100830	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10956452	0.84[ASN][1000 genomes]
rs1155582	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11989639	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1372451	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1519849	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519850	1.00[ASN][1000 genomes]
rs1519851	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1519852	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1914998	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2056314	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119756	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395855	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2395864	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2395865	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4568584	0.89[ASN][1000 genomes]
rs4628229	1.00[ASN][1000 genomes]
rs4733532	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4733659	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6470666	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6470669	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6470670	1.00[ASN][1000 genomes]
rs66941142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994811	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7010446	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7018093	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756122	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815713	0.92[ASN][1000 genomes]
rs7841974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283956	0.84[EUR][1000 genomes]
rs9297778	0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1850889	HHLA1	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129881600-129894200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:129886200-129891400	Enhancers	Dnd41	blood
3	chr8:129887200-129894000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:129887400-129894800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:129887400-129896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:129888600-129890800	Enhancers	NHDF-Ad	bronchial
7	chr8:129888600-129891200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:129888800-129890600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:129889400-129890600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:129889400-129890800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:129890000-129890600	Enhancers	Primary T cells from cord blood	blood
12	chr8:129890000-129890600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:129890000-129890800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:129890200-129893800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:129890400-129895800	Weak transcription	NHLF	lung

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