Variant report

Variant	rs11989639
Chromosome Location	chr8:129882921-129882922
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129878873..129881112-chr8:129881741..129884417,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10094336	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10098392	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100830	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155582	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372451	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519849	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519850	0.92[ASN][1000 genomes]
rs1519851	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519852	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850889	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1914998	0.91[EUR][1000 genomes]
rs2056314	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2119756	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395855	0.93[EUR][1000 genomes]
rs2395864	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395865	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568584	0.81[ASN][1000 genomes]
rs4628229	0.92[ASN][1000 genomes]
rs4733532	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733659	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470666	0.94[EUR][1000 genomes]
rs6470669	0.96[EUR][1000 genomes]
rs6470670	0.92[ASN][1000 genomes]
rs66941142	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994811	0.85[EUR][1000 genomes]
rs7010446	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7018093	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756122	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815713	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7841974	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9283956	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9297778	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv982118	chr8:129880035-129884391	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3329821	chr8:129882887-129883049	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129874600-129886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:129875000-129887000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129876200-129886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:129877000-129885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:129881000-129886600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:129881400-129886400	Weak transcription	NH-A	brain
7	chr8:129881400-129886400	Weak transcription	Osteobl	bone
8	chr8:129881600-129885800	Weak transcription	NHDF-Ad	bronchial
9	chr8:129881600-129886600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:129881600-129894200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:129882800-129888600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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