Variant report

Variant	rs1519852
Chromosome Location	chr8:129895737-129895738
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129883202..129885415-chr8:129894950..129896778,2	MCF-7	breast:
2	chr8:129895096..129896850-chr8:129901583..129903589,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10094336	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10098392	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989639	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372451	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519849	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519850	0.92[ASN][1000 genomes]
rs1519851	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850889	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1914998	0.90[EUR][1000 genomes]
rs2056314	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2119756	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395855	0.92[EUR][1000 genomes]
rs2395864	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395865	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568584	0.81[ASN][1000 genomes]
rs4628229	0.92[ASN][1000 genomes]
rs4733532	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733659	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470666	0.94[EUR][1000 genomes]
rs6470669	0.95[EUR][1000 genomes]
rs6470670	0.92[ASN][1000 genomes]
rs66941142	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994811	0.85[EUR][1000 genomes]
rs7010446	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7018093	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756122	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815713	1.00[ASN][1000 genomes]
rs7841974	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9283956	0.82[EUR][1000 genomes]
rs9297778	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129887400-129896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:129890400-129895800	Weak transcription	NHLF	lung
3	chr8:129893000-129897000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:129893000-129897000	Enhancers	NHDF-Ad	bronchial
5	chr8:129893600-129896600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:129893800-129896400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:129893800-129896800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:129894000-129896800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:129894200-129896400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:129894200-129896400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:129894200-129897000	Enhancers	NHEK	skin
12	chr8:129894400-129897000	Enhancers	HMEC	breast
13	chr8:129894800-129896800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:129895200-129896400	Enhancers	Placenta	Placenta
15	chr8:129895400-129895800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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