Variant report

Variant	rs2395865
Chromosome Location	chr8:129903689-129903690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10094336	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10098392	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100830	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155582	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989639	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372451	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519849	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519850	0.92[ASN][1000 genomes]
rs1519851	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519852	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850889	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1914998	0.89[EUR][1000 genomes]
rs2056314	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2119756	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395855	0.91[EUR][1000 genomes]
rs2395864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4568584	0.81[ASN][1000 genomes]
rs4628229	0.92[ASN][1000 genomes]
rs4733532	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470666	0.92[EUR][1000 genomes]
rs6470669	0.93[EUR][1000 genomes]
rs6470670	0.92[ASN][1000 genomes]
rs66941142	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994811	0.87[EUR][1000 genomes]
rs7010446	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7018093	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756122	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815713	1.00[ASN][1000 genomes]
rs7841974	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9283956	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9297778	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2395865	HHLA1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129899600-129909800	Weak transcription	Dnd41	blood
2	chr8:129902200-129903800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:129902400-129903800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:129902800-129903800	Enhancers	Osteobl	bone
5	chr8:129903400-129911800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:129903600-129904800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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