Variant report

Variant	rs756122
Chromosome Location	chr8:129912740-129912741
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10094336	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10098392	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10100830	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10956452	0.86[ASN][1000 genomes]
rs1155582	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11989639	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1372451	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519849	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1519850	0.97[ASN][1000 genomes]
rs1519851	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519852	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1850889	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1914998	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2056314	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2119756	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2395855	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2395864	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2395865	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4568584	0.91[ASN][1000 genomes]
rs4628229	0.97[ASN][1000 genomes]
rs4733532	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4733659	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6470666	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6470669	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6470670	0.97[ASN][1000 genomes]
rs66941142	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6994811	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7010446	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7018093	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815713	0.89[ASN][1000 genomes]
rs7841974	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9283956	0.85[EUR][1000 genomes]
rs9297778	0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs756122	HHLA1	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129910000-129912800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:129910200-129913600	Enhancers	Osteobl	bone
3	chr8:129910600-129913800	Enhancers	HSMM	muscle
4	chr8:129911200-129913600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:129911200-129913600	Enhancers	NHDF-Ad	bronchial
6	chr8:129911400-129913000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:129911400-129913000	Weak transcription	Psoas Muscle	Psoas
8	chr8:129911400-129913600	Enhancers	HSMMtube	muscle
9	chr8:129911600-129912800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:129911600-129912800	Weak transcription	Left Ventricle	heart
11	chr8:129911600-129913000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:129911800-129913000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:129911800-129913400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:129911800-129913600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:129912000-129913000	Weak transcription	Dnd41	blood
16	chr8:129912000-129913600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:129912200-129912800	Weak transcription	Placenta	Placenta
18	chr8:129912200-129913200	Enhancers	NH-A	brain
19	chr8:129912200-129913600	Enhancers	NHLF	lung
20	chr8:129912400-129913000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:129912600-129913000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr8:129912600-129913000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:129912600-129913000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:129912600-129913400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:129912600-129913400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:129912600-129913400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr8:129912600-129913400	Enhancers	Fetal Muscle Leg	muscle
28	chr8:129912600-129913400	Enhancers	NHEK	skin
29	chr8:129912600-129913600	Enhancers	Adipose Nuclei	Adipose
30	chr8:129912600-129913600	Enhancers	HMEC	breast

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