Variant report

Variant	rs4733532
Chromosome Location	chr8:129881299-129881300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129880648..129882498-chr8:129885129..129887830,2	K562	blood:
2	chr8:129868858..129872488-chr8:129878808..129881369,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10094336	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10098392	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100830	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155582	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989639	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372451	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519850	0.92[ASN][1000 genomes]
rs1519851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519852	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850889	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1914998	0.88[EUR][1000 genomes]
rs2056314	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2119756	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395855	0.90[EUR][1000 genomes]
rs2395864	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395865	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568584	0.81[ASN][1000 genomes]
rs4628229	0.92[ASN][1000 genomes]
rs4733659	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470666	0.91[EUR][1000 genomes]
rs6470669	0.92[EUR][1000 genomes]
rs6470670	0.92[ASN][1000 genomes]
rs66941142	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994811	0.82[EUR][1000 genomes]
rs7010446	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7018093	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756122	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815713	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7841974	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9283956	0.80[EUR][1000 genomes]
rs9297778	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv982118	chr8:129880035-129884391	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4733532	HHLA1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129874600-129886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:129875000-129887000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129876200-129886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:129877000-129885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:129879000-129881400	Enhancers	Osteobl	bone
6	chr8:129879000-129881600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:129880600-129881600	Enhancers	NHDF-Ad	bronchial
8	chr8:129880800-129881600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:129881000-129881400	Enhancers	NH-A	brain
10	chr8:129881000-129886600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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