Variant report

Variant	rs10160660
Chromosome Location	chr11:76474537-76474538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76463120..76464705-chr11:76473481..76475245,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160769	1.00[EUR][1000 genomes]
rs10437754	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793195	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899278	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899279	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899280	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10899281	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899282	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899283	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11236923	0.90[ASN][1000 genomes]
rs11236924	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236936	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12273016	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs12282785	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12290350	0.94[CEU][hapmap];0.82[CHB][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12788118	0.87[EUR][1000 genomes]
rs1440977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440979	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1440980	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1465900	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837679	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1837680	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1866843	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3758711	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4309181	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56228827	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107409	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs737185	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7933092	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942337	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7942368	0.97[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76457000-76474600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76467800-76478400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:76470000-76475000	Weak transcription	Fetal Brain Female	brain
4	chr11:76470200-76474800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:76470200-76479000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:76470400-76475000	Weak transcription	Fetal Brain Male	brain
7	chr11:76470600-76482000	Weak transcription	Psoas Muscle	Psoas
8	chr11:76471000-76475000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:76471600-76474800	Weak transcription	K562	blood
10	chr11:76471600-76475000	Weak transcription	Fetal Heart	heart
11	chr11:76472200-76477200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:76473000-76474800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:76473000-76478600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:76473200-76475000	Enhancers	A549	lung
15	chr11:76473400-76475000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:76473600-76483200	Enhancers	Esophagus	oesophagus
17	chr11:76473800-76475200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr11:76473800-76475400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:76473800-76475400	Enhancers	Small Intestine	intestine
20	chr11:76473800-76475600	Enhancers	Adipose Nuclei	Adipose
21	chr11:76473800-76479200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:76474000-76475400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:76474000-76475400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:76474000-76475400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:76474000-76475600	Enhancers	Stomach Mucosa	stomach
26	chr11:76474000-76475800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:76474000-76475800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:76474000-76475800	Enhancers	Right Atrium	heart
29	chr11:76474000-76476000	Enhancers	HMEC	breast
30	chr11:76474000-76476000	Enhancers	HUVEC	blood vessel
31	chr11:76474000-76476200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:76474000-76476200	Enhancers	Lung	lung
33	chr11:76474000-76478800	Enhancers	Duodenum Mucosa	Duodenum
34	chr11:76474000-76481000	Enhancers	Fetal Muscle Trunk	muscle
35	chr11:76474000-76481200	Enhancers	Spleen	Spleen
36	chr11:76474000-76485600	Enhancers	Left Ventricle	heart
37	chr11:76474200-76474600	Enhancers	Osteobl	bone
38	chr11:76474200-76475200	Enhancers	Stomach Smooth Muscle	stomach
39	chr11:76474200-76475400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:76474200-76475400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:76474200-76475400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:76474200-76475400	Enhancers	Brain Angular Gyrus	brain
43	chr11:76474200-76475400	Enhancers	NHDF-Ad	bronchial
44	chr11:76474200-76475400	Enhancers	NHLF	lung
45	chr11:76474200-76475800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:76474200-76475800	Enhancers	Brain Germinal Matrix	brain
47	chr11:76474200-76476200	Enhancers	NH-A	brain
48	chr11:76474200-76476400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr11:76474200-76477400	Enhancers	Fetal Lung	lung
50	chr11:76474200-76478200	Enhancers	Right Ventricle	heart

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